BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0478400 Os10g0478400|Os10g0478400
         (457 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G37035.1  | chr2:15555374-15556780 REVERSE LENGTH=434          147   1e-35

>AT2G37035.1 | chr2:15555374-15556780 REVERSE LENGTH=434
          Length = 433

 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/263 (35%), Positives = 136/263 (51%), Gaps = 49/263 (18%)

Query: 199 LDLTRRDAVAIINLLAMLSSVHVLAILGYITVHSVALGTVFASVAGQHLQGRPRRWFHFS 258
           L+L R DA A+  L++ LS+ +   ILG+ TV+S+ L  +F +V    L   P     F 
Sbjct: 215 LELGRSDAAALFFLVSFLSAAYGWVILGFTTVYSLVLAIMFVTVINDLLGRFP----SFL 270

Query: 259 GMAFR-----VRRLTGFAFLRWATRDAIVQMLCLWFFSEVHDQAQLFRLFVVAKLMPFSA 313
           G+ +R      +R+TGF  +RWA RDA+ Q+L LW+F EV DQ   FRLFV  KLMPF+ 
Sbjct: 271 GVVWRGSRLGFKRVTGFVLMRWAVRDALTQLLGLWYFGEVEDQYSFFRLFVRLKLMPFTV 330

Query: 314 SVNPWLAATVGGPELDGFFIAWALLDAVVSVLFTVVPWVIVMDRDPRPPGRNAVKEGCYL 373
            + PW+       E+ GF  AW LLD +V ++  V  +V ++  D R  GR  VKEG   
Sbjct: 331 -MPPWIRGF--EKEISGFLFAWFLLDTLVGLILAVDAFVAIV--DSRRRGREIVKEG--- 382

Query: 374 VSLMATDATLIKCWQTVVCGSMGQLAMVTLGGKVLGGFLHSIGEVYFMVVWLMFYFSARC 433
                      K + +V+  ++                     EVYFM  WL+FY +A+C
Sbjct: 383 -----------KSFASVIQSAL---------------------EVYFMAAWLVFYLAAKC 410

Query: 434 KEVRLGGRHFGLEDVAAALDGFR 456
           K+    GR FG  ++ + +DG R
Sbjct: 411 KDAHADGRRFGRREMESLIDGLR 433



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.330    0.141    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,962,803
Number of extensions: 249061
Number of successful extensions: 530
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 528
Number of HSP's successfully gapped: 2
Length of query: 457
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 355
Effective length of database: 8,310,137
Effective search space: 2950098635
Effective search space used: 2950098635
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 113 (48.1 bits)