FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0474600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.9 (0.0189) R2 : 0.0287
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.146 (0.0398) R2dN8 : 0.0371 R2N8 : 0.0287
σ : 0.356
deviance : 58.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
55.73 0.348 2920 -17800 0.0738 732000 -0.226 -4470000 0.159 0.31 995 90 -- --
57 0.354 2.9 0.0852 0.0731 0.623 -0.225 -- 0.157 0.122 995 90 -- --
55.94 0.348 2920 -17800 0.0752 732000 -- -4470000 0.161 23.6 995 90 -- --
55.23 0.346 2.9 0.0931 0.0766 1.54 -- -- 0.159 23.6 994.7 112 -- --
56.3 0.349 2920 -17800 -- 732000 -- -4470000 0.162 -- 995 90 -- --
57.43 0.355 2.9 0.0895 0.0712 -- -0.228 -- 0.155 0.0195 -- -- -- --
57.62 0.355 2.9 0.0993 0.0766 -- -- -- 0.157 22.7 -- -- -- --
55.56 0.347 2.9 0.0918 -- 1.55 -- -- 0.161 -- 994.7 112 -- --
55.45 0.347 2.9 -- 0.076 1.56 -- -- 0.159 23.6 994.7 109 -- --
57.98 0.356 2.9 0.101 -- -- -- -- 0.157 -- -- -- -- --
57.88 0.356 2.9 -- 0.0774 -- -- -- 0.146 22.8 -- -- -- --
55.78 0.348 2.9 -- -- 1.56 -- -- 0.151 -- 994.8 132 -- --
58.25 0.356 2.9 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.81 atmosphere 995.0 30 > th dose independent rect. 21 23
3 50.55 temperature 10.0 1440 > th dose independent rect. 21 1
6 50.55 temperature 30.0 1440 < th dose independent rect. 21 1
10 50.55 humidity 50.0 1440 > th dose independent rect. 21 1
16 50.55 atmosphere 995.0 1440 > th dose independent rect. 21 1
17 50.55 radiation 1.0 1440 < th dose independent rect. 21 1
37 50.55 temperature 10.0 1440 > th dose independent rect. 22 23
40 50.55 radiation 40.0 1440 < th dose dependent rect. 21 1
41 50.56 radiation 20.0 1440 < th dose dependent rect. 21 1
45 50.62 temperature 25.0 30 > th dose independent rect. 20 1
46 50.63 atmosphere 1005.0 30 > th dose dependent rect. 20 1
47 50.66 wind 3.0 30 > th dose independent rect. 20 1
48 50.67 temperature 20.0 30 > th dose dependent rect. 20 1
50 50.67 radiation 40.0 14400 < th dose dependent rect. 21 1
51 50.68 humidity 80.0 30 > th dose independent rect. 20 1
52 50.68 humidity 90.0 30 < th dose independent rect. 20 1
53 50.68 atmosphere 1005.0 30 > th dose independent rect. 20 1
63 50.72 wind 1.0 30 > th dose dependent rect. 20 1
65 50.73 wind 5.0 30 < th dose independent rect. 20 1
69 50.74 temperature 10.0 30 > th dose independent rect. 20 1
71 50.74 temperature 30.0 30 < th dose independent rect. 20 1
72 50.74 humidity 50.0 30 > th dose independent rect. 20 1
75 50.74 atmosphere 995.0 30 > th dose independent rect. 20 1
77 50.74 atmosphere 1010.0 30 < th dose independent rect. 20 1
79 50.74 radiation 1.0 30 < th dose independent rect. 20 1
84 50.74 precipitation 0.1 30 < th dose independent rect. 20 1
85 50.74 temperature 10.0 30 > th dose independent rect. 21 23
86 50.74 radiation 1.0 30 < th dose dependent rect. 20 1
91 50.74 precipitation 0.1 30 < th dose dependent rect. 20 1
92 50.75 humidity 50.0 30 > th dose dependent rect. 20 1
95 50.77 wind 9.0 30 < th dose dependent rect. 20 1
97 50.79 wind 9.0 30 < th dose independent rect. 21 23
101 50.83 humidity 90.0 30 < th dose dependent rect. 20 1
107 50.91 atmosphere 1015.0 30 < th dose dependent rect. 20 1
108 50.95 temperature 30.0 30 < th dose dependent rect. 20 1
120 51.13 wind 9.0 1440 < th dose independent rect. 21 1
171 52.21 precipitation 0.1 30 < th dose independent rect. 21 23
172 52.21 precipitation 0.1 30 < th dose dependent rect. 21 23
201 53.40 precipitation 0.1 1440 < th dose independent rect. 21 1
202 53.40 humidity 50.0 30 > th dose independent rect. 21 23
203 53.40 precipitation 0.1 1440 < th dose dependent rect. 21 1
208 53.57 temperature 20.0 30 > th dose dependent rect. 20 7
211 53.66 wind 1.0 30 > th dose independent rect. 21 23
241 53.96 atmosphere 1015.0 30 < th dose independent rect. 21 23
268 54.07 atmosphere 995.0 30 > th dose independent rect. 3 23
278 54.20 atmosphere 995.0 30 > th dose independent rect. 23 23
289 54.38 temperature 25.0 90 > th dose independent rect. 19 8
291 54.38 temperature 25.0 720 > th dose dependent rect. 4 4
294 54.39 temperature 25.0 720 > th dose independent rect. 3 6
305 54.49 humidity 90.0 10 < th dose independent rect. 20 3
332 54.68 temperature 20.0 30 > th dose dependent rect. 2 1
335 54.69 atmosphere 1005.0 30 > th dose dependent rect. 2 1
337 54.70 wind 9.0 1440 < th dose independent rect. 3 1
339 54.70 temperature 20.0 30 > th dose independent rect. 2 1
340 54.70 temperature 10.0 1440 > th dose independent rect. 3 1
343 54.70 temperature 30.0 1440 < th dose independent rect. 3 1
347 54.70 humidity 50.0 1440 > th dose independent rect. 3 1
356 54.70 atmosphere 995.0 1440 > th dose independent rect. 3 1
357 54.70 radiation 1.0 1440 < th dose independent rect. 3 1
377 54.70 wind 3.0 10 > th dose independent rect. 20 3
379 54.70 temperature 10.0 1440 > th dose independent rect. 4 23
384 54.70 radiation 1.0 1440 < th dose dependent rect. 3 1
400 54.71 wind 3.0 30 < th dose independent rect. 2 1
401 54.71 atmosphere 1005.0 30 > th dose independent rect. 2 1
403 54.71 wind 3.0 30 < th dose dependent rect. 2 1
415 54.72 humidity 90.0 30 > th dose independent rect. 2 1
421 54.73 temperature 10.0 30 > th dose independent rect. 2 1
423 54.73 temperature 30.0 30 < th dose independent rect. 2 1
424 54.73 humidity 50.0 30 > th dose independent rect. 2 1
429 54.73 atmosphere 1010.0 30 < th dose independent rect. 2 1
431 54.73 radiation 1.0 30 < th dose independent rect. 2 1
436 54.73 precipitation 0.1 30 < th dose independent rect. 2 1
437 54.73 temperature 10.0 30 > th dose independent rect. 3 23
438 54.73 humidity 50.0 30 > th dose dependent rect. 2 1
442 54.73 radiation 1.0 30 < th dose dependent rect. 2 1
447 54.73 precipitation 0.1 30 < th dose dependent rect. 2 1
462 54.77 atmosphere 995.0 10 > th dose independent rect. 12 8
463 54.77 atmosphere 1015.0 30 < th dose dependent rect. 2 1
473 54.80 temperature 30.0 30 < th dose dependent rect. 2 1
475 54.81 wind 1.0 30 > th dose independent rect. 2 1
488 54.84 precipitation 0.1 30 < th dose independent rect. 3 23
490 54.84 precipitation 0.1 30 < th dose dependent rect. 3 23
494 54.85 temperature 10.0 30 > th dose dependent rect. 21 23
497 54.86 temperature 25.0 270 > th dose independent rect. 17 10
498 54.86 atmosphere 995.0 90 > th dose independent rect. 3 16
507 54.88 atmosphere 995.0 30 > th dose independent rect. 23 21
515 54.90 wind 9.0 1440 < th dose independent rect. 23 1
516 54.90 temperature 10.0 1440 > th dose independent rect. 23 1
519 54.90 temperature 30.0 1440 < th dose independent rect. 23 1
523 54.90 humidity 50.0 1440 > th dose independent rect. 23 1
533 54.90 atmosphere 995.0 1440 > th dose independent rect. 23 1
534 54.90 radiation 1.0 1440 < th dose independent rect. 23 1
555 54.90 temperature 10.0 1440 > th dose independent rect. 24 23
559 54.90 radiation 1.0 1440 < th dose dependent rect. 23 1
565 54.91 humidity 90.0 30 < th dose independent rect. 22 1
600 54.94 atmosphere 1005.0 30 > th dose dependent rect. 22 1
602 54.94 atmosphere 995.0 10 > th dose dependent rect. 12 8
604 54.95 temperature 25.0 30 > th dose independent rect. 22 1
608 54.96 atmosphere 1005.0 30 > th dose independent rect. 22 1
610 54.96 wind 9.0 30 < th dose independent rect. 3 23
615 54.97 temperature 20.0 30 > th dose dependent rect. 22 1
616 54.97 humidity 90.0 30 < th dose dependent rect. 22 1
619 54.98 atmosphere 995.0 10 > th dose independent sin 9 NA
636 55.00 wind 1.0 30 > th dose independent rect. 22 1
638 55.00 precipitation 0.1 30 < th dose independent rect. 22 1
639 55.00 temperature 30.0 10 > th dose independent rect. 16 3
654 55.00 precipitation 0.1 30 < th dose dependent rect. 22 1
661 55.01 humidity 70.0 30 < th dose independent rect. 18 1
666 55.02 wind 7.0 30 < th dose independent rect. 22 1
669 55.02 temperature 10.0 30 > th dose independent rect. 22 1
671 55.02 temperature 30.0 30 < th dose independent rect. 22 1
672 55.02 humidity 50.0 30 > th dose independent rect. 22 1
677 55.02 atmosphere 1010.0 30 < th dose independent rect. 22 1
679 55.02 radiation 1.0 30 < th dose independent rect. 22 1
699 55.02 temperature 10.0 30 > th dose independent rect. 23 23
700 55.02 radiation 1.0 30 < th dose dependent rect. 22 1
708 55.03 atmosphere 1000.0 10 < th dose independent rect. 17 1
746 55.03 atmosphere 1000.0 10 < th dose dependent rect. 17 1
754 55.03 temperature 10.0 90 > th dose dependent rect. 3 16
757 55.04 wind 9.0 30 < th dose dependent rect. 22 1
766 55.05 wind 1.0 30 > th dose dependent rect. 22 1
774 55.06 humidity 50.0 30 > th dose dependent rect. 22 1
826 55.11 atmosphere 995.0 270 > th dose independent rect. 3 14
840 55.13 temperature 30.0 90 > th dose dependent rect. 16 17
848 55.14 temperature 30.0 90 > th dose dependent rect. 16 1
857 55.14 radiation 1.0 720 < th dose dependent rect. 21 8
890 55.17 atmosphere 1015.0 30 < th dose dependent rect. 22 1
910 55.20 atmosphere 995.0 720 > th dose independent rect. 17 16
911 55.20 wind 1.0 10 > th dose independent rect. 23 21
912 55.20 radiation 10.0 90 > th dose dependent rect. 17 1
930 55.21 temperature 30.0 30 < th dose independent rect. 21 23
939 55.23 radiation 1.0 720 < th dose independent rect. 21 8
944 55.24 atmosphere 995.0 720 > th dose independent rect. 21 18
945 55.24 temperature 30.0 30 < th dose dependent rect. 22 1
948 55.25 temperature 10.0 720 > th dose independent rect. 9 8
949 55.25 atmosphere 1015.0 720 < th dose independent rect. 9 8
951 55.25 temperature 10.0 720 > th dose independent rect. 17 16
958 55.27 radiation 10.0 10 < th dose independent rect. 21 23
976 55.28 radiation 10.0 90 > th dose independent rect. 17 1