Os10g0471300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cyanate lyase (CYN).
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Os10g0471300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cyanate lyase (CYN).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.11 | 0.231 | 13.1 | -1.03 | 0.462 | -0.4 | 0.127 | 1.3 | -0.219 | 22.7 | 89.98 | 6607 | -- | -- |
| 25.51 | 0.235 | 13.1 | -0.836 | 0.464 | -0.308 | -0.0985 | -- | -0.218 | 22.6 | 85.78 | 4844 | -- | -- |
| 24.17 | 0.229 | 13.1 | -1.02 | 0.462 | -0.399 | -- | 1.24 | -0.219 | 22.7 | 89.83 | 6613 | -- | -- |
| 25.16 | 0.234 | 13.2 | -0.803 | 0.479 | -0.396 | -- | -- | -0.272 | 23 | 87.06 | 4763 | -- | -- |
| 36.84 | 0.283 | 13.1 | -0.995 | -- | -0.57 | -- | 1.31 | -0.253 | -- | 89.95 | 6618 | -- | -- |
| 27.97 | 0.248 | 13.1 | -0.888 | 0.5 | -- | -0.0396 | -- | -0.111 | 22.6 | -- | -- | -- | -- |
| 27.98 | 0.248 | 13.1 | -0.887 | 0.5 | -- | -- | -- | -0.111 | 22.6 | -- | -- | -- | -- |
| 37.12 | 0.284 | 13.2 | -0.772 | -- | -0.626 | -- | -- | -0.341 | -- | 86 | 5151 | -- | -- |
| 41.46 | 0.3 | 13.2 | -- | 0.483 | -0.587 | -- | -- | -0.283 | 22.9 | 86.17 | 4775 | -- | -- |
| 43.39 | 0.308 | 13.1 | -0.878 | -- | -- | -- | -- | -0.109 | -- | -- | -- | -- | -- |
| 48.71 | 0.326 | 13.1 | -- | 0.494 | -- | -- | -- | -0.0125 | 22.5 | -- | -- | -- | -- |
| 51.46 | 0.334 | 13.2 | -- | -- | -0.867 | -- | -- | -0.331 | -- | 86.98 | 5162 | -- | -- |
| 63.7 | 0.373 | 13.1 | -- | -- | -- | -- | -- | -0.0114 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.55 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 2 | 23.59 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 14 | 23.72 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 15 | 23.75 | radiation | 30 | 4320 | < th | dose independent | rect. | 20 | 12 |
| 18 | 23.77 | radiation | 30 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 27 | 23.77 | radiation | 30 | 4320 | < th | dose independent | rect. | 23 | 9 |
| 36 | 23.79 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 2 |
| 69 | 24.06 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 87 | 24.12 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 91 | 24.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 93 | 24.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 94 | 24.16 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 1 |
| 97 | 24.17 | humidity | 90 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 98 | 24.18 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 3 |
| 103 | 24.21 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 2 |
| 104 | 24.21 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 3 |
| 122 | 24.25 | humidity | 90 | 14400 | > th | dose independent | sin | 13 | NA |
| 139 | 24.28 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 2 |
| 151 | 24.31 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 2 |
| 158 | 24.32 | humidity | 90 | 14400 | > th | dose independent | rect. | 19 | 13 |
| 170 | 24.33 | humidity | 50 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 185 | 24.35 | humidity | 90 | 14400 | < th | dose independent | sin | 13 | NA |
| 195 | 24.35 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 215 | 24.38 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 238 | 24.40 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 298 | 24.43 | humidity | 90 | 14400 | > th | dose dependent | rect. | 4 | 4 |
| 339 | 24.46 | humidity | 50 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 342 | 24.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 13 | 18 |
| 352 | 24.47 | humidity | 70 | 720 | < th | dose independent | rect. | 17 | 18 |
| 387 | 24.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 9 | 7 |
| 393 | 24.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 4 |
| 401 | 24.50 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 4 |
| 405 | 24.51 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 2 |
| 406 | 24.51 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 4 |
| 416 | 24.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 422 | 24.51 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 20 |
| 426 | 24.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 9 | 6 |
| 441 | 24.52 | radiation | 1 | 1440 | > th | dose dependent | rect. | 7 | 1 |
| 466 | 24.53 | humidity | 80 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 486 | 24.54 | radiation | 30 | 1440 | < th | dose dependent | rect. | 7 | 2 |
| 512 | 24.55 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 588 | 24.58 | humidity | 90 | 4320 | < th | dose independent | rect. | 6 | 20 |
| 608 | 24.58 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 14 |
| 619 | 24.59 | humidity | 90 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 639 | 24.59 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 1 |
| 679 | 24.60 | radiation | 1 | 43200 | < th | dose dependent | rect. | 15 | 1 |
| 689 | 24.60 | radiation | 1 | 1440 | > th | dose dependent | rect. | 17 | 16 |
| 721 | 24.61 | radiation | 1 | 43200 | < th | dose dependent | rect. | 12 | 4 |
| 724 | 24.61 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 740 | 24.62 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 8 |
| 782 | 24.63 | humidity | 90 | 4320 | > th | dose independent | rect. | 6 | 4 |
| 803 | 24.63 | humidity | 90 | 14400 | > th | dose dependent | sin | 5 | NA |
| 805 | 24.63 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 892 | 24.65 | radiation | 40 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 893 | 24.65 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 964 | 24.67 | wind | 7 | 43200 | > th | dose dependent | rect. | 2 | 12 |