BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0471300 Os10g0471300|AK105134
         (168 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23490.1  | chr3:8423238-8424415 REVERSE LENGTH=169            238   1e-63

>AT3G23490.1 | chr3:8423238-8424415 REVERSE LENGTH=169
          Length = 168

 Score =  238 bits (606), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 106/151 (70%), Positives = 129/151 (85%)

Query: 16  LMAAKAESRKSFSEIGEEAGLTNVYVAQLLRRQAQLKPETAPALRAAVPGLTDDLVALMM 75
           L+A K+ S K+FS++  E GLTNVYVAQLLRRQAQLKP+T P L+ A+P LTD+L+  MM
Sbjct: 13  LLAVKSASGKTFSQLAAETGLTNVYVAQLLRRQAQLKPDTVPKLKEALPALTDELIGDMM 72

Query: 76  EPPFRSYHPDIVHEPAIYRLNEAVMHFGESIKEIINEEFGDGIMSAIDFYCSVDKVQGAD 135
            PP+RSY P+++ EP IYRLNEAVMHFGESIKEIINE+FGDGIMSAIDFYCSVDK++G D
Sbjct: 73  SPPWRSYDPNLIQEPTIYRLNEAVMHFGESIKEIINEDFGDGIMSAIDFYCSVDKIKGVD 132

Query: 136 GKDRVVVTFDGKYLPYSEQRSDHMMSRLTRK 166
           G +RVVVT DGKYL +SEQR+++M+SRL  K
Sbjct: 133 GNNRVVVTLDGKYLSHSEQRTENMVSRLNLK 163



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,110,968
Number of extensions: 123913
Number of successful extensions: 274
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 274
Number of HSP's successfully gapped: 1
Length of query: 168
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 77
Effective length of database: 8,611,713
Effective search space: 663101901
Effective search space used: 663101901
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 108 (46.2 bits)