Os10g0466700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)].
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Os10g0466700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : 60S ribosomal protein L17 [Oryza sativa (japonica cultivar-group)].
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 65.09 | 0.379 | 14.2 | -0.223 | 0.837 | 0.746 | 0.376 | -1.32 | -0.0689 | 19.4 | 20.52 | 2858 | -- | -- |
| 68.04 | 0.384 | 14.2 | 0.0183 | 0.863 | 0.958 | 0.41 | -- | -0.0302 | 19.3 | 20.59 | 2746 | -- | -- |
| 65.46 | 0.377 | 14.2 | -0.229 | 0.837 | 0.747 | -- | -1.32 | -0.0661 | 19.4 | 20.52 | 2827 | -- | -- |
| 68.35 | 0.385 | 14.2 | 0.0128 | 0.838 | 0.952 | -- | -- | -0.00172 | 19.3 | 20.39 | 2747 | -- | -- |
| 85.85 | 0.432 | 14.2 | 0.0672 | -- | 0.758 | -- | -0.989 | -0.0311 | -- | 25.78 | 387 | -- | -- |
| 87 | 0.437 | 14.1 | 0.548 | 0.819 | -- | 0.523 | -- | 0.245 | 19.6 | -- | -- | -- | -- |
| 87.77 | 0.439 | 14.1 | 0.535 | 0.82 | -- | -- | -- | 0.246 | 19.6 | -- | -- | -- | -- |
| 86.32 | 0.433 | 14.1 | 0.297 | -- | 0.78 | -- | -- | 0.00905 | -- | 26.21 | 420 | -- | -- |
| 68.02 | 0.384 | 14.2 | -- | 0.843 | 0.997 | -- | -- | -0.0116 | 19.3 | 19.9 | 2770 | -- | -- |
| 123.78 | 0.52 | 14.1 | 0.523 | -- | -- | -- | -- | 0.234 | -- | -- | -- | -- | -- |
| 95.32 | 0.457 | 14.1 | -- | 0.815 | -- | -- | -- | 0.187 | 19.6 | -- | -- | -- | -- |
| 88.72 | 0.439 | 14.2 | -- | -- | 0.824 | -- | -- | -0.0371 | -- | 26.2 | 429 | -- | -- |
| 131 | 0.534 | 14.1 | -- | -- | -- | -- | -- | 0.176 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 61.62 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 19 |
| 20 | 63.74 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 21 |
| 21 | 63.80 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 25 | 63.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 3 | 4 |
| 27 | 63.99 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 34 | 64.13 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 40 | 64.33 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 9 |
| 45 | 64.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 7 |
| 48 | 64.37 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 7 |
| 52 | 64.40 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 9 |
| 64 | 64.48 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 65 | 64.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 118 | 64.76 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 147 | 64.92 | temperature | 20 | 4320 | > th | dose independent | sin | 15 | NA |
| 167 | 65.00 | temperature | 20 | 4320 | < th | dose independent | sin | 14 | NA |
| 278 | 65.41 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 304 | 65.52 | temperature | 20 | 1440 | > th | dose independent | sin | 10 | NA |
| 350 | 65.65 | temperature | 20 | 1440 | < th | dose independent | sin | 10 | NA |
| 693 | 66.51 | temperature | 20 | 4320 | > th | dose independent | rect. | 5 | 23 |
| 701 | 66.53 | temperature | 20 | 4320 | > th | dose independent | no | NA | NA |
| 735 | 66.61 | temperature | 20 | 4320 | < th | dose independent | rect. | 5 | 23 |
| 746 | 66.63 | temperature | 20 | 4320 | < th | dose independent | no | NA | NA |
| 781 | 66.71 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 23 |
| 825 | 66.79 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 858 | 66.86 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 7 |