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Os10g0458700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Ribonuclease H domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0168) R2 : 0.0427
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.16 (0.0354) R2dN8 : 0.0552 R2N8 : 0.0427
σ : 0.317
deviance : 46.13
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.59 0.223 11 -0.45 0.6 -0.511 0.314 0.332 0.00979 0.92 24.92 109 -- --
22.72 0.222 11 -0.397 0.599 -0.541 0.394 -- 0.021 0.9 24.65 115 -- --
22.91 0.223 11 -0.48 0.593 -0.489 -- 0.539 0.00743 0.927 24.8 113 -- --
23.26 0.225 11 -0.415 0.588 -0.63 -- -- 0.0451 0.848 22.67 131 -- --
38.2 0.288 11 -0.441 -- -0.608 -- 0.0272 -0.00175 -- 27.86 911 -- --
26.94 0.243 11 -0.267 0.517 -- 0.404 -- 0.123 0.73 -- -- -- --
27.63 0.246 11 -0.282 0.516 -- -- -- 0.121 0.712 -- -- -- --
38.19 0.288 11 -0.442 -- -0.614 -- -- -0.00532 -- 27.6 935 -- --
27.29 0.243 11 -- 0.569 -0.439 -- -- 0.108 0.731 22.83 57 -- --
44.29 0.311 11 -0.264 -- -- -- -- 0.131 -- -- -- -- --
29.73 0.255 11 -- 0.512 -- -- -- 0.153 0.686 -- -- -- --
42.76 0.305 11 -- -- -0.427 -- -- 0.0798 -- 27.7 921 -- --
46.13 0.317 11 -- -- -- -- -- 0.16 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 16.82 temperature 10.0 270 > th dose dependent rect. 18 9
4 17.47 temperature 20.0 90 > th dose independent rect. 9 19
6 17.75 temperature 15.0 10 > th dose dependent rect. 20 9
20 18.40 temperature 10.0 10 > th dose dependent rect. 9 20
29 18.70 temperature 15.0 270 > th dose independent rect. 6 22
31 18.80 temperature 20.0 30 > th dose independent rect. 20 9
39 18.95 temperature 15.0 270 > th dose independent rect. 17 10
103 19.90 atmosphere 1010.0 30 < th dose independent rect. 9 20
122 20.02 radiation 10.0 30 < th dose dependent sin 11 NA
153 20.27 temperature 30.0 270 < th dose dependent rect. 15 16
167 20.39 radiation 1.0 90 < th dose independent sin 11 NA
169 20.40 atmosphere 1015.0 270 < th dose independent rect. 7 20
174 20.43 radiation 1.0 90 > th dose independent sin 11 NA
175 20.43 radiation 1.0 30 > th dose independent rect. 5 4
190 20.45 precipitation 0.1 270 < th dose independent rect. 3 14
191 20.45 precipitation 0.1 270 < th dose dependent rect. 3 14
215 20.52 temperature 15.0 270 > th dose dependent rect. 18 18
217 20.53 atmosphere 1010.0 270 < th dose independent rect. 18 9
220 20.54 wind 9.0 270 < th dose independent rect. 17 10
225 20.55 temperature 20.0 270 > th dose independent rect. 18 19
232 20.57 atmosphere 1010.0 10 < th dose independent rect. 20 9
233 20.57 precipitation 0.1 270 < th dose independent rect. 17 10
235 20.57 radiation 1.0 30 > th dose independent rect. 16 17
238 20.57 precipitation 0.1 270 < th dose dependent rect. 17 10
244 20.61 radiation 20.0 270 < th dose independent rect. 17 10
247 20.61 temperature 10.0 270 > th dose independent rect. 3 14
248 20.61 atmosphere 1015.0 270 < th dose independent rect. 3 14
257 20.65 wind 7.0 90 < th dose independent rect. 9 20
261 20.66 temperature 20.0 90 > th dose independent rect. 20 18
263 20.67 temperature 10.0 43200 > th dose independent rect. 10 6
280 20.73 precipitation 0.1 270 < th dose independent rect. 3 4
282 20.73 precipitation 0.1 270 < th dose dependent rect. 3 4
283 20.73 radiation 40.0 270 < th dose dependent rect. 17 10
285 20.74 wind 9.0 270 < th dose independent rect. 7 20
301 20.81 atmosphere 995.0 270 > th dose independent rect. 17 10
313 20.83 wind 9.0 30 < th dose dependent rect. 9 20
318 20.85 wind 7.0 270 < th dose independent rect. 3 4
323 20.87 atmosphere 995.0 10 > th dose independent rect. 9 20
332 20.88 wind 9.0 270 < th dose independent rect. 6 22
336 20.89 temperature 10.0 270 > th dose independent rect. 3 4
338 20.89 temperature 30.0 270 < th dose independent rect. 3 4
339 20.89 humidity 50.0 270 > th dose independent rect. 3 4
341 20.89 atmosphere 995.0 270 > th dose independent rect. 3 4
342 20.89 atmosphere 1015.0 270 < th dose independent rect. 3 4
343 20.89 radiation 30.0 270 < th dose independent rect. 3 4
345 20.89 humidity 50.0 270 > th dose independent rect. 17 10
349 20.90 precipitation 0.1 10 < th dose independent rect. 5 4
361 20.90 precipitation 0.1 10 < th dose dependent rect. 5 4
369 20.91 temperature 10.0 10 > th dose dependent rect. 5 4
380 20.94 wind 7.0 10 < th dose independent rect. 5 4
382 20.94 temperature 10.0 10 > th dose independent rect. 5 4
384 20.94 temperature 30.0 10 < th dose independent rect. 5 4
385 20.94 humidity 50.0 10 > th dose independent rect. 5 4
387 20.94 atmosphere 995.0 10 > th dose independent rect. 5 4
388 20.94 atmosphere 1015.0 10 < th dose independent rect. 5 4
389 20.94 wind 9.0 270 < th dose independent rect. 3 14
413 20.98 precipitation 0.1 270 < th dose independent rect. 4 2
418 20.98 precipitation 0.1 10 < th dose independent rect. 9 20
419 20.98 precipitation 0.1 270 < th dose dependent rect. 4 2
422 20.98 precipitation 0.1 10 < th dose dependent rect. 9 20
425 20.99 precipitation 0.1 270 < th dose independent rect. 7 20
426 20.99 wind 9.0 90 < th dose dependent rect. 5 4
427 20.99 radiation 40.0 270 < th dose dependent rect. 3 4
430 20.99 precipitation 0.1 270 < th dose dependent rect. 7 20
442 21.03 radiation 40.0 30 < th dose independent rect. 5 4
456 21.05 wind 9.0 270 < th dose dependent rect. 3 4
462 21.06 temperature 10.0 270 > th dose independent rect. 4 2
464 21.06 temperature 30.0 270 < th dose independent rect. 4 2
465 21.06 humidity 50.0 270 > th dose independent rect. 4 2
468 21.06 atmosphere 995.0 270 > th dose independent rect. 4 2
469 21.06 atmosphere 1015.0 270 < th dose independent rect. 4 2
505 21.08 humidity 50.0 90 > th dose dependent rect. 5 4
559 21.13 humidity 50.0 270 > th dose dependent rect. 3 4
621 21.22 wind 9.0 270 < th dose dependent rect. 7 20
639 21.23 atmosphere 995.0 10 > th dose dependent rect. 5 4
669 21.28 temperature 20.0 90 > th dose independent rect. 9 6
729 21.34 wind 9.0 270 < th dose dependent rect. 17 10
732 21.35 radiation 20.0 4320 < th dose independent rect. 21 9
744 21.37 humidity 90.0 90 < th dose independent rect. 9 6
791 21.44 radiation 1.0 90 < th dose dependent rect. 19 11
829 21.49 temperature 15.0 1440 > th dose independent rect. 10 6
912 21.55 temperature 30.0 90 < th dose independent rect. 19 10
922 21.55 temperature 10.0 90 > th dose independent rect. 5 14
923 21.55 atmosphere 1015.0 90 < th dose independent rect. 5 14
943 21.56 radiation 1.0 90 < th dose dependent rect. 19 19
976 21.60 temperature 20.0 10 > th dose independent rect. 9 6
996 21.61 atmosphere 995.0 270 > th dose independent rect. 3 14