BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0458700 Os10g0458700|AK101347
(323 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G01410.1 | chr3:153650-155439 REVERSE LENGTH=295 244 4e-65
AT1G24090.1 | chr1:8520834-8522737 FORWARD LENGTH=354 234 7e-62
AT5G51080.1 | chr5:20769022-20770675 REVERSE LENGTH=323 162 3e-40
>AT3G01410.1 | chr3:153650-155439 REVERSE LENGTH=295
Length = 294
Score = 244 bits (623), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 135/313 (43%), Positives = 180/313 (57%), Gaps = 33/313 (10%)
Query: 2 EEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSN 61
+E +Y+VRKG+++ VY+SL++CQ Q SSVS PA S YKG W + E+ LSS G+ N
Sbjct: 7 DEKDAFYIVRKGDIIGVYRSLSECQGQAGSSVSHPAMSVYKGYGWPKGAEDLLSSFGIKN 66
Query: 62 ATYVINAAELREDLFGTLIPCTFQEITVSSSNQSALNHTGVLNNTRYQPGAQSVDLNYDA 121
A + +NA+ +++D FG LIPC Q+ SSS +LN + P + D+
Sbjct: 67 ALFSVNASHVKDDAFGKLIPCPVQQ--PSSSQGESLNKS--------SPSKRLQDMGSGE 116
Query: 122 VGSGQASAEHYSQRINQGYSVRGQAXXXXXXXXXXXXXXXXXXXDQSGTVDAQPLSKQYM 181
GS S +I R S + P+ +Q
Sbjct: 117 SGSFSPSPPQKQLKIENDMLRR----------------------IPSSLLTRTPI-RQND 153
Query: 182 VCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYAIR 241
C + FDGASKGNPGKAGAGAVL D V+ LREG+G TNNVAEYR L+LGLR A+
Sbjct: 154 SCTIEFDGASKGNPGKAGAGAVLRASDNSVLFYLREGVGNATNNVAEYRALLLGLRSALD 213
Query: 242 HGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNAEA 301
GFK + V GDS LVC QV+G W+T + M ELCK+ ++L +F +F+I HI RE N+EA
Sbjct: 214 KGFKNVHVLGDSMLVCMQVQGAWKTNHPKMAELCKQAKELMNSFKTFDIKHIAREKNSEA 273
Query: 302 DRQANIAITLSSG 314
D+QAN AI L+ G
Sbjct: 274 DKQANSAIFLADG 286
>AT1G24090.1 | chr1:8520834-8522737 FORWARD LENGTH=354
Length = 353
Score = 234 bits (596), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 178/318 (55%), Gaps = 49/318 (15%)
Query: 2 EEGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSN 61
+E +++VRKG+++ +YK L+DCQAQ+ SSV S YKG S ++ EEYLSS GL
Sbjct: 79 KEKDAFFVVRKGDVIGIYKDLSDCQAQVGSSVFDLPVSVYKGYSLPKDTEEYLSSVGLKK 138
Query: 62 ATYVINAAELREDLFGTLIPCTFQE---ITVSSSNQSALNHTGVLNNTRYQPGAQSVDLN 118
Y + A++L++D+FG L PC FQE TV S + T ++ + Q S ++
Sbjct: 139 PLYSLRASDLKDDMFGALTPCLFQEPAPCTVKVSEDETTSETKSKDDKKDQ--LPSASIS 196
Query: 119 YDAVGSGQASAEHYSQRINQGYSVRGQAXXXXXXXXXXXXXXXXXXXDQSGTVDAQPLSK 178
YD + E S+ Y D++
Sbjct: 197 YDPL-------EKLSKVEPSAY-----------------------ISDET---------- 216
Query: 179 QYMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRY 238
C + FDGASKGNPG +GA AVL TEDG +I R+R+GLGI TNN AEY LILGL+Y
Sbjct: 217 ----CFIEFDGASKGNPGLSGAAAVLKTEDGSLICRVRQGLGIATNNAAEYHALILGLKY 272
Query: 239 AIRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWN 298
AI G+K I V GDS+LVC Q+KG W+ ++ + +L KE + L VSFEI+H+ R N
Sbjct: 273 AIEKGYKNIKVKGDSKLVCMQIKGQWKVNHEVLAKLHKEAKLLCNKCVSFEISHVLRNLN 332
Query: 299 AEADRQANIAITLSSGVV 316
A+AD QAN+A+ L G V
Sbjct: 333 ADADEQANLAVRLPEGEV 350
>AT5G51080.1 | chr5:20769022-20770675 REVERSE LENGTH=323
Length = 322
Score = 162 bits (409), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 75/137 (54%), Positives = 101/137 (73%)
Query: 180 YMVCLLHFDGASKGNPGKAGAGAVLMTEDGRVISRLREGLGIVTNNVAEYRGLILGLRYA 239
Y C++ FDGASKGNPG +GA AVL TEDG +I ++R+GLGI TNN AEY GLILGL++A
Sbjct: 183 YETCIIEFDGASKGNPGLSGAAAVLKTEDGSLIFKMRQGLGIATNNAAEYHGLILGLKHA 242
Query: 240 IRHGFKKIIVYGDSQLVCYQVKGTWQTKNQNMMELCKEVRKLKENFVSFEINHIRREWNA 299
I G+ KI V DS+LVC Q+KG W+ ++ + +L KE ++L + +SFEI+H+ R N+
Sbjct: 243 IEKGYTKIKVKTDSKLVCMQMKGQWKVNHEVLSKLHKEAKQLSDKCLSFEISHVLRSLNS 302
Query: 300 EADRQANIAITLSSGVV 316
+AD QAN+A LS G V
Sbjct: 303 DADEQANMAARLSEGEV 319
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/90 (48%), Positives = 59/90 (65%)
Query: 3 EGSNYYLVRKGEMVAVYKSLNDCQAQICSSVSGPAASAYKGNSWSREKEEYLSSRGLSNA 62
E +++VRKG++V +YK L DCQAQ+ SSV P S YKG S ++ EE LS+ GL
Sbjct: 77 EKDAFFVVRKGDIVGIYKDLIDCQAQVGSSVYDPPVSVYKGYSLLKDTEECLSTVGLKKP 136
Query: 63 TYVINAAELREDLFGTLIPCTFQEITVSSS 92
YV A +L+ED+FG L PC FQ+ S+S
Sbjct: 137 LYVFRALDLKEDMFGALTPCLFQDQLPSAS 166
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.130 0.373
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,535,803
Number of extensions: 251376
Number of successful extensions: 488
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 6
Length of query: 323
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 224
Effective length of database: 8,392,385
Effective search space: 1879894240
Effective search space used: 1879894240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 112 (47.8 bits)