Os10g0457500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Yeast ham (Hydroxylaminopurine sensitivity) related protein 1 (HAM-1- like protein).
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Os10g0457500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Yeast ham (Hydroxylaminopurine sensitivity) related protein 1 (HAM-1- like protein).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 98.2 | 0.466 | 9.68 | -1.75 | 0.68 | 0.965 | 0.808 | 0.465 | -0.676 | 7.72 | 25.31 | 631 | -- | -- |
| 97.57 | 0.46 | 9.67 | -1.89 | 0.748 | 1.05 | 0.606 | -- | -0.645 | 7.49 | 25.8 | 633 | -- | -- |
| 98.9 | 0.463 | 9.67 | -1.8 | 0.711 | 1.01 | -- | 0.249 | -0.608 | 7.17 | 25.8 | 623 | -- | -- |
| 98.5 | 0.462 | 9.68 | -1.88 | 0.759 | 1.03 | -- | -- | -0.649 | 7.27 | 25.8 | 623 | -- | -- |
| 106.75 | 0.481 | 9.68 | -1.73 | -- | 0.839 | -- | 0.406 | -0.584 | -- | 25.9 | 1356 | -- | -- |
| 131.46 | 0.538 | 9.63 | -1.58 | 0.139 | -- | 0.549 | -- | -0.339 | 8.43 | -- | -- | -- | -- |
| 131.71 | 0.537 | 9.63 | -1.57 | 0.185 | -- | -- | -- | -0.342 | 6 | -- | -- | -- | -- |
| 106.62 | 0.481 | 9.71 | -1.87 | -- | 0.92 | -- | -- | -0.648 | -- | 26 | 1336 | -- | -- |
| 183.26 | 0.631 | 9.63 | -- | 0.525 | 0.582 | -- | -- | -0.387 | 6.65 | 25.52 | 474 | -- | -- |
| 133.48 | 0.54 | 9.63 | -1.56 | -- | -- | -- | -- | -0.338 | -- | -- | -- | -- | -- |
| 196.47 | 0.656 | 9.59 | -- | 0.163 | -- | -- | -- | -0.167 | 6.48 | -- | -- | -- | -- |
| 190.77 | 0.643 | 9.62 | -- | -- | 0.447 | -- | -- | -0.265 | -- | 25.5 | 1268 | -- | -- |
| 197.85 | 0.657 | 9.59 | -- | -- | -- | -- | -- | -0.164 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 94.64 | temperature | 30 | 720 | < th | dose dependent | sin | 22 | NA |
| 4 | 95.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 17 |
| 16 | 96.42 | temperature | 30 | 720 | < th | dose dependent | rect. | 11 | 6 |
| 31 | 97.15 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 15 |
| 34 | 97.18 | temperature | 25 | 720 | < th | dose independent | sin | 22 | NA |
| 48 | 97.53 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 10 |
| 50 | 97.56 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 53 | 97.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 16 |
| 75 | 97.81 | temperature | 25 | 720 | > th | dose independent | sin | 22 | NA |
| 82 | 97.87 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 13 |
| 90 | 97.97 | temperature | 10 | 720 | > th | dose dependent | sin | 21 | NA |
| 154 | 98.59 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 159 | 98.63 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 12 |
| 228 | 98.96 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 3 |
| 310 | 99.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 5 |
| 368 | 99.60 | temperature | 30 | 10 | < th | dose dependent | sin | 16 | NA |
| 425 | 99.76 | temperature | 30 | 720 | < th | dose dependent | rect. | 21 | 23 |
| 430 | 99.78 | temperature | 30 | 90 | < th | dose dependent | sin | 17 | NA |
| 485 | 99.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 541 | 100.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 8 | 23 |
| 546 | 100.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 550 | 100.08 | temperature | 30 | 720 | < th | dose dependent | rect. | 10 | 23 |
| 551 | 100.09 | temperature | 30 | 720 | < th | dose dependent | no | NA | NA |
| 604 | 100.21 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 23 |
| 648 | 100.34 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 751 | 100.54 | temperature | 10 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 898 | 100.82 | temperature | 10 | 10 | > th | dose dependent | sin | 16 | NA |
| 994 | 100.99 | temperature | 20 | 720 | > th | dose dependent | rect. | 20 | 23 |