BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0457500 Os10g0457500|AK059744
         (205 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G13720.1  | chr4:7967166-7968894 REVERSE LENGTH=207            329   7e-91

>AT4G13720.1 | chr4:7967166-7968894 REVERSE LENGTH=207
          Length = 206

 Score =  329 bits (843), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 155/191 (81%), Positives = 171/191 (89%)

Query: 12  LPKAVTFVTGNAKKLEEVRAILGSSIPFQSLKLDLPELQGEPEDISKEKARMAASQVNGP 71
           LP+ VTFVTGNAKKLEEV+AI+G+SIPF+SLKLDLPELQGEPEDISKEKAR+AA QV+GP
Sbjct: 12  LPRPVTFVTGNAKKLEEVKAIIGNSIPFKSLKLDLPELQGEPEDISKEKARLAALQVDGP 71

Query: 72  VLVEDTCLCFNALKGLPGPYIKWFLEKTGHEGLNNLLLAYEDKSAFAMCIFSLALGPGEE 131
           VLVEDTCLCFNALKGLPGPYIKWFLEK GHEGLNNLL+AYEDKSA+A+C FS + GPG E
Sbjct: 72  VLVEDTCLCFNALKGLPGPYIKWFLEKLGHEGLNNLLMAYEDKSAYALCAFSFSRGPGAE 131

Query: 132 PMTFVGKTAGKIVPARGPADFGWDPVFQPDGFDQTYAEMPKSVKNQISHRGKALALVKEH 191
           P+TF+GKT GKIVPARGP DFGWDPVFQPDG+DQTYAEM K  KN+ISHR K+LALVK H
Sbjct: 132 PLTFLGKTPGKIVPARGPTDFGWDPVFQPDGYDQTYAEMAKEEKNKISHRYKSLALVKSH 191

Query: 192 FAAANYKVQND 202
           F  A Y  Q D
Sbjct: 192 FKEAGYVFQTD 202



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,397,093
Number of extensions: 184675
Number of successful extensions: 349
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 1
Length of query: 205
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 111
Effective length of database: 8,529,465
Effective search space: 946770615
Effective search space used: 946770615
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)