Os10g0456500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nodulin 6l.
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Os10g0456500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Nodulin 6l.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.02 | 0.253 | 10.5 | 0.771 | 0.158 | -0.684 | -0.453 | 2.23 | 0.252 | 18.5 | 21.7 | 1496 | -- | -- |
| 33.93 | 0.271 | 10.5 | 0.281 | 0.183 | -0.619 | -0.383 | -- | 0.134 | 18.1 | 16.71 | 7829 | -- | -- |
| 29.49 | 0.253 | 10.5 | 0.784 | 0.146 | -0.68 | -- | 2.28 | 0.251 | 18.3 | 21.85 | 1430 | -- | -- |
| 34.23 | 0.272 | 10.5 | 0.265 | 0.164 | -0.696 | -- | -- | 0.137 | 18.2 | 14.98 | 7886 | -- | -- |
| 30.51 | 0.257 | 10.5 | 0.783 | -- | -0.698 | -- | 2.32 | 0.247 | -- | 21.9 | 1385 | -- | -- |
| 42.72 | 0.306 | 10.6 | -0.114 | 0.164 | -- | -0.421 | -- | -0.0678 | 18 | -- | -- | -- | -- |
| 43.12 | 0.308 | 10.6 | -0.11 | 0.164 | -- | -- | -- | -0.069 | 17.5 | -- | -- | -- | -- |
| 35.34 | 0.277 | 10.5 | 0.249 | -- | -0.68 | -- | -- | 0.119 | -- | 15.1 | 7054 | -- | -- |
| 35.43 | 0.277 | 10.6 | -- | 0.144 | -0.532 | -- | -- | 0.0668 | 18.6 | 15.83 | 6928 | -- | -- |
| 44.51 | 0.312 | 10.6 | -0.115 | -- | -- | -- | -- | -0.073 | -- | -- | -- | -- | -- |
| 43.44 | 0.308 | 10.6 | -- | 0.165 | -- | -- | -- | -0.0568 | 17.5 | -- | -- | -- | -- |
| 36.19 | 0.28 | 10.6 | -- | -- | -0.543 | -- | -- | 0.0272 | -- | 18.4 | 4311 | -- | -- |
| 44.86 | 0.313 | 10.6 | -- | -- | -- | -- | -- | -0.0602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.47 | wind | 5 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 2 | 27.60 | wind | 5 | 43200 | < th | dose independent | rect. | 13 | 2 |
| 3 | 27.75 | wind | 3 | 43200 | > th | dose dependent | rect. | 13 | 2 |
| 4 | 27.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 18 | 28.09 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 19 | 28.10 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 21 | 28.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 10 |
| 22 | 28.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 16 | 13 |
| 45 | 28.20 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 47 | 28.21 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 6 |
| 61 | 28.26 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 71 | 28.31 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 81 | 28.35 | wind | 5 | 43200 | > th | dose independent | rect. | 11 | 10 |
| 91 | 28.40 | wind | 5 | 43200 | < th | dose independent | rect. | 11 | 10 |
| 118 | 28.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 130 | 28.54 | humidity | 90 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 136 | 28.57 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 9 |
| 164 | 28.65 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 8 |
| 220 | 28.82 | humidity | 90 | 43200 | < th | dose independent | rect. | 20 | 3 |
| 227 | 28.84 | radiation | 20 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 266 | 28.90 | wind | 9 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 286 | 28.96 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 295 | 28.99 | wind | 5 | 43200 | < th | dose independent | sin | 20 | NA |
| 296 | 28.99 | radiation | 1 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 298 | 28.99 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 7 |
| 300 | 28.99 | wind | 3 | 43200 | > th | dose dependent | rect. | 11 | 10 |
| 306 | 29.00 | radiation | 10 | 43200 | > th | dose dependent | rect. | 5 | 3 |
| 321 | 29.01 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 325 | 29.01 | humidity | 90 | 43200 | > th | dose dependent | sin | 4 | NA |
| 326 | 29.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 329 | 29.01 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 11 |
| 332 | 29.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 333 | 29.02 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 18 |
| 335 | 29.03 | wind | 5 | 43200 | > th | dose independent | sin | 19 | NA |
| 355 | 29.04 | radiation | 30 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 377 | 29.06 | humidity | 90 | 43200 | > th | dose dependent | rect. | 1 | 22 |
| 380 | 29.07 | radiation | 40 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 381 | 29.07 | wind | 9 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 393 | 29.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 395 | 29.08 | temperature | 25 | 1440 | > th | dose independent | sin | 17 | NA |
| 418 | 29.09 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 445 | 29.10 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 446 | 29.10 | temperature | 25 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 462 | 29.11 | humidity | 90 | 43200 | > th | dose dependent | rect. | 7 | 23 |
| 465 | 29.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 18 |
| 482 | 29.13 | humidity | 90 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 491 | 29.13 | humidity | 90 | 43200 | > th | dose dependent | rect. | 11 | 23 |
| 494 | 29.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 497 | 29.14 | radiation | 40 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 498 | 29.14 | radiation | 20 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 568 | 29.16 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 569 | 29.16 | temperature | 25 | 4320 | > th | dose dependent | rect. | 15 | 3 |
| 640 | 29.19 | temperature | 25 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 668 | 29.20 | wind | 9 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 674 | 29.20 | humidity | 90 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 680 | 29.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 11 | 4 |
| 697 | 29.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 17 |
| 724 | 29.22 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 764 | 29.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 19 |
| 803 | 29.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 816 | 29.26 | radiation | 40 | 43200 | > th | dose independent | rect. | 7 | 4 |
| 841 | 29.26 | humidity | 90 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 859 | 29.27 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 22 |
| 870 | 29.28 | radiation | 20 | 43200 | < th | dose independent | sin | 9 | NA |
| 871 | 29.28 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 892 | 29.29 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 910 | 29.30 | humidity | 90 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 916 | 29.31 | humidity | 90 | 43200 | < th | dose independent | sin | 17 | NA |
| 987 | 29.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 999 | 29.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 22 |