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Os10g0446800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ketol-acid reductoisomerase, chloroplast precursor (EC 1.1.1.86) (Acetohydroxy-acid reductoisomerase) (Alpha-keto-beta-hydroxylacil reductoisomerase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 42.33 | 0.306 | 8.48 | 1.28 | 0.603 | -0.86 | 0.513 | 1.62 | 0.133 | 17.6 | 26.63 | 1239 | -- | -- |
| 42.82 | 0.305 | 8.52 | 0.882 | 0.603 | -0.661 | 0.574 | -- | 0.0468 | 17.6 | 27.03 | 1213 | -- | -- |
| 42.94 | 0.305 | 8.48 | 1.3 | 0.61 | -0.882 | -- | 1.75 | 0.13 | 17.7 | 26.88 | 1230 | -- | -- |
| 43.32 | 0.307 | 8.53 | 0.895 | 0.624 | -0.701 | -- | -- | 0.0383 | 17.8 | 27.07 | 1184 | -- | -- |
| 61.74 | 0.366 | 8.47 | 1.25 | -- | -0.897 | -- | 1.35 | 0.144 | -- | 26.2 | 1266 | -- | -- |
| 62.07 | 0.369 | 8.53 | 0.689 | 0.651 | -- | 0.705 | -- | 0.0401 | 17 | -- | -- | -- | -- |
| 63.32 | 0.373 | 8.53 | 0.69 | 0.657 | -- | -- | -- | 0.0434 | 17.1 | -- | -- | -- | -- |
| 62.04 | 0.367 | 8.51 | 0.902 | -- | -0.745 | -- | -- | 0.0644 | -- | 26.34 | 1264 | -- | -- |
| 62.85 | 0.369 | 8.56 | -- | 0.616 | -0.532 | -- | -- | -0.0949 | 17.8 | 28.53 | 1164 | -- | -- |
| 85.97 | 0.433 | 8.52 | 0.667 | -- | -- | -- | -- | 0.0267 | -- | -- | -- | -- | -- |
| 75.87 | 0.407 | 8.54 | -- | 0.645 | -- | -- | -- | -0.0334 | 17.1 | -- | -- | -- | -- |
| 81.8 | 0.421 | 8.55 | -- | -- | -0.564 | -- | -- | -0.123 | -- | 28.6 | 1233 | -- | -- |
| 97.69 | 0.461 | 8.54 | -- | -- | -- | -- | -- | -0.0472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.93 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 13 | 18 |
| 4 | 41.07 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 21 | 41.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 14 | 5 |
| 30 | 42.04 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 33 | 42.06 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 9 |
| 81 | 42.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 2 | 17 |
| 97 | 42.69 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 120 | 42.84 | wind | 5.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 124 | 42.87 | radiation | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 140 | 42.96 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 143 | 42.97 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 17 | NA |
| 160 | 43.07 | wind | 9.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 183 | 43.26 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 17 | 9 |
| 187 | 43.28 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 20 |
| 201 | 43.40 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 3 | 6 |
| 203 | 43.40 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 211 | 43.45 | humidity | 70.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 225 | 43.54 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 234 | 43.64 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 15 | 11 |
| 237 | 43.68 | humidity | 70.0 | 270 | > th | dose independent | rect. | 17 | 9 |
| 239 | 43.69 | temperature | 30.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 263 | 43.80 | temperature | 30.0 | 270 | < th | dose independent | rect. | 7 | 18 |
| 267 | 43.82 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 4 |
| 271 | 43.84 | temperature | 10.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 274 | 43.84 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 3 | 6 |
| 275 | 43.84 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 3 | 6 |
| 276 | 43.84 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 282 | 43.90 | radiation | 1.0 | 270 | < th | dose independent | rect. | 15 | 11 |
| 289 | 43.93 | radiation | 1.0 | 270 | < th | dose independent | rect. | 17 | 9 |
| 292 | 43.93 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 13 |
| 319 | 44.03 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 326 | 44.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 6 | 14 |
| 405 | 44.25 | atmosphere | 995.0 | 90 | > th | dose dependent | rect. | 9 | 18 |
| 419 | 44.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 1 | 7 |
| 445 | 44.32 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 15 | 1 |
| 454 | 44.33 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 482 | 44.38 | temperature | 30.0 | 90 | < th | dose independent | rect. | 9 | 18 |
| 484 | 44.39 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 507 | 44.52 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 15 | 1 |
| 524 | 44.57 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 14 | 20 |
| 533 | 44.61 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 3 |
| 536 | 44.61 | humidity | 50.0 | 90 | > th | dose independent | rect. | 9 | 18 |
| 539 | 44.63 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 6 |
| 560 | 44.67 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 14 | 20 |
| 577 | 44.71 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 6 |
| 580 | 44.71 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 632 | 44.84 | humidity | 50.0 | 270 | > th | dose independent | rect. | 7 | 18 |
| 635 | 44.84 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 7 | 19 |
| 677 | 45.00 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 18 |
| 679 | 45.00 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 680 | 45.01 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 16 |
| 682 | 45.01 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 16 |
| 683 | 45.02 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 16 |
| 686 | 45.02 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 728 | 45.15 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 734 | 45.16 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 7 | 18 |
| 775 | 45.26 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 6 |
| 776 | 45.26 | temperature | 15.0 | 270 | > th | dose independent | rect. | 2 | 16 |
| 779 | 45.26 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 6 |
| 782 | 45.26 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 9 | 18 |
| 785 | 45.27 | radiation | 40.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 799 | 45.32 | temperature | 10.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 801 | 45.32 | temperature | 30.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 802 | 45.32 | humidity | 50.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 804 | 45.32 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 4 | 5 |
| 805 | 45.32 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 806 | 45.32 | temperature | 10.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 832 | 45.37 | radiation | 40.0 | 10 | < th | dose independent | rect. | 4 | 5 |
| 989 | 45.48 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 19 |
| 997 | 45.49 | humidity | 50.0 | 270 | > th | dose independent | rect. | 5 | 22 |
