Os10g0442600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Cell division control protein 48 homolog A (AtCDC48a).
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Os10g0442600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Cell division control protein 48 homolog A (AtCDC48a).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.32 | 0.222 | 14.9 | 0.799 | 0.671 | 0.097 | 0.352 | -4.49 | 0.569 | 23.5 | 28.97 | 1956 | -- | -- |
| 23.01 | 0.223 | 14.8 | 1.48 | 0.657 | -0.329 | 0.36 | -- | 0.645 | 23.6 | 28.68 | 5876 | -- | -- |
| 22.84 | 0.223 | 14.9 | 0.803 | 0.668 | 0.108 | -- | -4.5 | 0.58 | 23.4 | 29.18 | 1942 | -- | -- |
| 23.5 | 0.226 | 14.8 | 1.48 | 0.65 | -0.324 | -- | -- | 0.66 | 23.6 | 28.2 | 5879 | -- | -- |
| 47.1 | 0.321 | 14.8 | 1.48 | -- | -0.882 | -- | 0.706 | 0.647 | -- | 29.18 | 1942 | -- | -- |
| 28 | 0.248 | 14.8 | 1.39 | 0.645 | -- | 0.29 | -- | 0.663 | 23.5 | -- | -- | -- | -- |
| 28.36 | 0.249 | 14.8 | 1.38 | 0.644 | -- | -- | -- | 0.662 | 23.5 | -- | -- | -- | -- |
| 44.54 | 0.312 | 14.8 | 1.47 | -- | -0.83 | -- | -- | 0.655 | -- | 28.2 | 5879 | -- | -- |
| 48.95 | 0.326 | 14.9 | -- | 0.631 | 0.877 | -- | -- | 0.247 | 23.5 | 7.228 | 47520 | -- | -- |
| 54.35 | 0.344 | 14.8 | 1.4 | -- | -- | -- | -- | 0.669 | -- | -- | -- | -- | -- |
| 78.61 | 0.415 | 14.8 | -- | 0.659 | -- | -- | -- | 0.508 | 23.6 | -- | -- | -- | -- |
| 73.86 | 0.4 | 14.9 | -- | -- | 0.91 | -- | -- | 0.242 | -- | 6.108 | 47520 | -- | -- |
| 105.9 | 0.48 | 14.8 | -- | -- | -- | -- | -- | 0.514 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.91 | precipitation | 1e-01 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 3 | 21.01 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 6 | 21.22 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 20 | 2 |
| 8 | 21.23 | precipitation | 1e-01 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 10 | 21.24 | precipitation | 1e-01 | 43200 | < th | dose independent | rect. | 17 | 2 |
| 11 | 21.24 | precipitation | 1e-01 | 43200 | < th | dose dependent | rect. | 17 | 2 |
| 15 | 21.32 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 22 | 21.50 | wind | 7e+00 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 28 | 21.59 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 16 | 5 |
| 45 | 21.87 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 52 | 21.89 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 71 | 21.99 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 74 | 21.99 | wind | 9e+00 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 107 | 22.10 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 5 |
| 134 | 22.13 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 139 | 22.14 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 156 | 22.16 | atmosphere | 1e+03 | 43200 | < th | dose dependent | rect. | 20 | 3 |
| 196 | 22.19 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 198 | 22.19 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 267 | 22.21 | atmosphere | 1e+03 | 43200 | < th | dose independent | sin | 14 | NA |
| 303 | 22.22 | atmosphere | 1e+03 | 43200 | > th | dose independent | sin | 13 | NA |
| 305 | 22.22 | atmosphere | 1e+03 | 43200 | < th | dose independent | sin | 12 | NA |
| 308 | 22.22 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 324 | 22.22 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 329 | 22.22 | wind | 9e+00 | 43200 | > th | dose dependent | rect. | 20 | 6 |
| 338 | 22.23 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 349 | 22.23 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 9 |
| 414 | 22.24 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 458 | 22.25 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 466 | 22.25 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 12 | 9 |
| 594 | 22.26 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 16 | 21 |
| 705 | 22.27 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 18 | 23 |
| 718 | 22.28 | atmosphere | 1e+03 | 43200 | > th | dose independent | no | NA | NA |
| 720 | 22.28 | atmosphere | 1e+03 | 43200 | < th | dose independent | no | NA | NA |
| 721 | 22.28 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 743 | 22.28 | humidity | 5e+01 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 763 | 22.28 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 24 | 21 |
| 768 | 22.28 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 19 | 22 |
| 786 | 22.28 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 794 | 22.28 | atmosphere | 1e+03 | 43200 | < th | dose dependent | sin | 13 | NA |
| 818 | 22.29 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 9 |
| 821 | 22.29 | wind | 9e+00 | 43200 | > th | dose independent | rect. | 17 | 11 |
| 839 | 22.29 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 2 | 19 |
| 840 | 22.29 | atmosphere | 1e+03 | 43200 | > th | dose independent | rect. | 1 | 20 |
| 898 | 22.30 | atmosphere | 1e+03 | 43200 | < th | dose independent | rect. | 12 | 5 |