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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0438500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Cyclin-like F-box domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.03 (0.0185) R2 : 0.101
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.279 (0.0389) R2dN8 : 0.13 R2N8 : 0.101
σ : 0.348
deviance : 55.7
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
54.02 0.345 3.03 -0.0847 0.136 0.173 -0.426 -0.276 0.24 6.15 89.94 710 -- --
54.17 0.343 3.03 -0.06 0.117 0.168 -0.316 -- 0.246 6 88.78 819 -- --
54.37 0.343 3.03 -0.0717 0.115 0.174 -- -0.13 0.245 6.29 88.78 819 -- --
54.41 0.344 3.03 -0.0596 0.12 0.184 -- -- 0.246 6.53 88 819 -- --
54.88 0.345 3.03 -0.0703 -- 0.174 -- -0.152 0.249 -- 89.36 1034 -- --
54.85 0.347 3.03 -0.0847 0.0907 -- -0.316 -- 0.266 4.49 -- -- -- --
55.09 0.348 3.03 -0.0826 0.0894 -- -- -- 0.268 3.62 -- -- -- --
54.92 0.345 3.03 -0.057 -- 0.172 -- -- 0.25 -- 89.48 1034 -- --
54.5 0.344 3.03 -- 0.121 0.193 -- -- 0.251 6.66 88.01 819 -- --
55.53 0.348 3.03 -0.0789 -- -- -- -- 0.27 -- -- -- -- --
55.27 0.348 3.03 -- 0.0878 -- -- -- 0.277 3.63 -- -- -- --
55 0.345 3.03 -- -- 0.182 -- -- 0.255 -- 89.3 1034 -- --
55.7 0.348 3.03 -- -- -- -- -- 0.279 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 49.67 radiation 20.0 4320 < th dose dependent rect. 21 1
3 49.68 temperature 25.0 30 > th dose independent rect. 20 1
4 49.68 temperature 25.0 30 > th dose dependent rect. 20 1
6 49.68 radiation 30.0 43200 < th dose dependent rect. 21 1
14 49.73 temperature 10.0 1440 > th dose independent rect. 21 1
17 49.73 temperature 30.0 1440 < th dose independent rect. 21 1
21 49.73 humidity 50.0 1440 > th dose independent rect. 21 1
27 49.73 atmosphere 995.0 1440 > th dose independent rect. 21 1
28 49.73 radiation 1.0 1440 < th dose independent rect. 21 1
48 49.73 temperature 10.0 1440 > th dose independent rect. 22 23
51 49.74 wind 3.0 30 > th dose independent rect. 20 1
59 49.80 humidity 90.0 30 < th dose independent rect. 20 1
60 49.82 wind 1.0 30 > th dose dependent rect. 20 1
61 49.82 atmosphere 1005.0 30 > th dose dependent rect. 20 1
63 49.84 wind 5.0 30 < th dose independent rect. 20 1
68 49.85 temperature 10.0 30 > th dose independent rect. 20 1
70 49.85 temperature 30.0 30 < th dose independent rect. 20 1
71 49.85 humidity 50.0 30 > th dose independent rect. 20 1
75 49.85 atmosphere 995.0 30 > th dose independent rect. 20 1
76 49.85 atmosphere 1010.0 30 < th dose independent rect. 20 1
78 49.85 radiation 1.0 30 < th dose independent rect. 20 1
83 49.85 precipitation 0.1 30 < th dose independent rect. 20 1
84 49.85 temperature 10.0 30 > th dose independent rect. 21 23
86 49.85 radiation 1.0 30 < th dose dependent rect. 20 1
91 49.85 precipitation 0.1 30 < th dose dependent rect. 20 1
93 49.88 humidity 50.0 30 > th dose dependent rect. 20 1
98 49.90 wind 9.0 30 < th dose independent rect. 21 23
99 49.90 wind 9.0 30 < th dose dependent rect. 20 1
100 49.91 humidity 90.0 30 < th dose dependent rect. 20 1
101 49.91 atmosphere 1015.0 30 < th dose dependent rect. 20 1
105 49.96 wind 9.0 1440 < th dose independent rect. 21 1
114 50.22 temperature 30.0 30 < th dose dependent rect. 20 1
172 51.95 atmosphere 995.0 30 > th dose independent rect. 21 23
175 52.08 precipitation 0.1 30 < th dose independent rect. 21 23
176 52.08 precipitation 0.1 30 < th dose dependent rect. 21 23
179 52.13 humidity 90.0 90 < th dose independent rect. 1 6
181 52.13 humidity 90.0 10 < th dose dependent rect. 1 6
191 52.26 atmosphere 1005.0 90 > th dose dependent rect. 1 6
233 52.65 humidity 80.0 270 < th dose independent rect. 1 1
238 52.65 radiation 10.0 30 < th dose independent rect. 21 9
239 52.65 humidity 80.0 270 < th dose dependent rect. 1 1
247 52.70 atmosphere 1015.0 30 < th dose independent rect. 21 23
249 52.70 radiation 1.0 30 > th dose dependent rect. 5 2
293 52.76 atmosphere 1005.0 270 > th dose dependent rect. 3 1
302 52.81 humidity 50.0 30 > th dose independent rect. 21 23
316 52.88 humidity 90.0 90 < th dose independent rect. 5 2
325 52.90 precipitation 0.1 1440 < th dose independent rect. 21 1
327 52.90 precipitation 0.1 1440 < th dose dependent rect. 21 1
333 52.93 radiation 10.0 30 < th dose dependent rect. 21 9
334 52.94 wind 1.0 90 > th dose independent rect. 19 13
342 52.96 atmosphere 1005.0 30 > th dose dependent rect. 14 7
345 52.97 atmosphere 1005.0 90 > th dose independent rect. 1 6
350 52.98 wind 7.0 90 < th dose independent rect. 19 13
351 52.98 atmosphere 1005.0 90 > th dose dependent rect. 5 2
353 52.99 temperature 30.0 30 < th dose independent rect. 21 23
360 53.01 temperature 30.0 90 < th dose independent rect. 21 16
368 53.03 atmosphere 995.0 90 > th dose independent rect. 8 11
369 53.03 precipitation 0.1 90 < th dose independent rect. 19 13
370 53.03 humidity 90.0 30 < th dose independent rect. 1 20
373 53.03 precipitation 0.1 90 < th dose dependent rect. 19 13
390 53.04 wind 1.0 90 > th dose independent rect. 8 11
392 53.04 temperature 25.0 30 > th dose independent rect. 19 13
416 53.06 temperature 10.0 90 > th dose independent rect. 8 11
417 53.06 atmosphere 1015.0 90 < th dose independent rect. 8 11
419 53.06 temperature 10.0 90 > th dose independent rect. 19 13
420 53.06 temperature 30.0 90 < th dose independent rect. 19 13
421 53.06 humidity 50.0 90 > th dose independent rect. 19 13
423 53.06 atmosphere 995.0 90 > th dose independent rect. 19 13
427 53.07 temperature 30.0 90 < th dose independent rect. 8 10
428 53.07 radiation 40.0 90 < th dose independent rect. 19 13
431 53.07 radiation 10.0 30 < th dose dependent rect. 21 23
432 53.08 humidity 80.0 1440 > th dose independent rect. 24 2
434 53.08 temperature 25.0 30 > th dose independent rect. 14 18
435 53.08 atmosphere 1005.0 10 > th dose dependent rect. 6 1
437 53.08 atmosphere 1005.0 10 > th dose dependent rect. 5 3
453 53.09 humidity 50.0 30 > th dose dependent rect. 21 9
461 53.10 precipitation 0.1 90 < th dose independent rect. 8 11
469 53.10 precipitation 0.1 90 < th dose dependent rect. 8 11
478 53.12 wind 9.0 270 < th dose independent rect. 11 10
485 53.13 atmosphere 1015.0 270 < th dose independent rect. 11 10
486 53.13 atmosphere 1015.0 90 < th dose independent rect. 19 13
487 53.13 precipitation 0.1 720 < th dose independent rect. 9 22
495 53.13 precipitation 0.1 720 < th dose dependent rect. 9 22
496 53.14 atmosphere 1015.0 720 < th dose independent rect. 19 2
516 53.17 atmosphere 1000.0 270 > th dose independent rect. 21 14
523 53.18 temperature 25.0 90 < th dose independent rect. 6 1
526 53.18 wind 1.0 270 > th dose independent rect. 11 10
527 53.18 humidity 50.0 270 > th dose independent rect. 11 10
528 53.18 precipitation 0.1 270 < th dose independent rect. 11 10
529 53.18 temperature 20.0 30 > th dose independent rect. 6 15
531 53.18 precipitation 0.1 270 < th dose dependent rect. 11 10
534 53.19 wind 7.0 10 < th dose independent rect. 19 13
535 53.19 humidity 50.0 270 > th dose independent rect. 21 14
542 53.20 atmosphere 1000.0 720 > th dose independent rect. 7 2
544 53.20 humidity 80.0 10 > th dose independent rect. 22 8
554 53.20 temperature 10.0 30 > th dose dependent rect. 6 15
555 53.21 wind 7.0 720 < th dose independent rect. 19 2
556 53.21 temperature 10.0 270 > th dose independent rect. 11 10
560 53.21 temperature 10.0 270 > th dose independent rect. 21 14
562 53.21 wind 1.0 90 > th dose independent rect. 5 16
567 53.21 atmosphere 995.0 90 > th dose dependent rect. 8 11
568 53.22 atmosphere 1005.0 10 > th dose independent rect. 6 2
573 53.22 atmosphere 995.0 10 > th dose independent rect. 8 11
574 53.22 radiation 1.0 90 > th dose independent rect. 18 13
575 53.22 precipitation 0.1 10 < th dose independent rect. 19 13
576 53.22 radiation 1.0 90 < th dose independent rect. 21 22
578 53.22 humidity 50.0 720 > th dose dependent rect. 21 6
579 53.22 atmosphere 995.0 10 > th dose dependent rect. 8 11
580 53.22 precipitation 0.1 10 < th dose dependent rect. 19 13
582 53.23 radiation 1.0 90 > th dose independent rect. 4 3
593 53.23 wind 9.0 270 < th dose independent rect. 21 14
594 53.23 precipitation 0.1 270 < th dose independent rect. 21 14
595 53.23 temperature 30.0 30 < th dose dependent rect. 6 1
598 53.23 precipitation 0.1 270 < th dose dependent rect. 21 14
600 53.24 humidity 60.0 720 > th dose independent rect. 19 2
602 53.24 temperature 30.0 30 < th dose independent rect. 8 6
603 53.24 temperature 10.0 1440 > th dose independent rect. 22 9
606 53.24 temperature 30.0 1440 < th dose independent rect. 22 9
610 53.24 humidity 50.0 1440 > th dose independent rect. 22 9
615 53.24 atmosphere 995.0 1440 > th dose independent rect. 22 9
616 53.24 radiation 40.0 1440 < th dose independent rect. 22 9
620 53.24 wind 9.0 90 < th dose independent rect. 8 11
621 53.24 temperature 10.0 1440 > th dose independent rect. 9 11
626 53.24 temperature 10.0 1440 > th dose independent rect. 20 13
629 53.24 humidity 50.0 1440 > th dose independent rect. 20 13
631 53.24 atmosphere 995.0 1440 > th dose independent rect. 20 13
634 53.24 temperature 10.0 1440 > th dose independent rect. 7 15
637 53.24 precipitation 0.1 30 < th dose independent rect. 6 15
638 53.24 precipitation 0.1 720 < th dose independent rect. 4 17
647 53.24 temperature 25.0 10 > th dose dependent rect. 19 13
648 53.24 precipitation 0.1 30 < th dose dependent rect. 6 15
649 53.24 precipitation 0.1 720 < th dose dependent rect. 4 17
652 53.25 humidity 50.0 90 > th dose independent rect. 8 11
655 53.25 atmosphere 1015.0 10 < th dose independent rect. 19 13
662 53.25 temperature 25.0 10 > th dose dependent rect. 20 11
663 53.25 temperature 10.0 30 > th dose dependent rect. 19 13
671 53.26 temperature 10.0 10 > th dose independent rect. 8 11
674 53.26 atmosphere 1015.0 10 < th dose independent rect. 8 11
675 53.26 precipitation 0.1 10 < th dose independent rect. 8 11
676 53.26 temperature 10.0 10 > th dose independent rect. 19 13
677 53.26 temperature 30.0 10 < th dose independent rect. 19 13
678 53.26 humidity 50.0 10 > th dose independent rect. 19 13
680 53.26 atmosphere 995.0 10 > th dose independent rect. 19 13
694 53.26 precipitation 0.1 10 < th dose dependent rect. 8 11
697 53.26 atmosphere 995.0 10 > th dose dependent rect. 14 18
700 53.27 precipitation 0.1 720 < th dose independent rect. 19 2
705 53.27 precipitation 0.1 720 < th dose dependent rect. 19 2
709 53.27 atmosphere 995.0 10 > th dose dependent rect. 19 13
712 53.28 atmosphere 1005.0 270 > th dose independent rect. 3 1
714 53.28 temperature 10.0 720 > th dose independent rect. 19 2
715 53.28 temperature 30.0 720 < th dose independent rect. 19 2
719 53.28 atmosphere 995.0 720 > th dose independent rect. 19 2
721 53.28 radiation 1.0 720 < th dose independent rect. 19 2
741 53.28 atmosphere 995.0 720 > th dose independent rect. 21 22
745 53.28 atmosphere 995.0 720 > th dose dependent rect. 8 1
751 53.28 radiation 1.0 720 < th dose dependent rect. 19 2
766 53.29 wind 1.0 720 > th dose independent rect. 19 2
767 53.29 humidity 60.0 720 > th dose independent rect. 7 2
768 53.29 wind 9.0 30 < th dose independent rect. 21 9
769 53.29 temperature 10.0 30 > th dose independent rect. 21 9
770 53.29 temperature 30.0 30 < th dose independent rect. 21 9
771 53.29 humidity 50.0 30 > th dose independent rect. 21 9
774 53.29 atmosphere 995.0 30 > th dose independent rect. 21 9
779 53.29 humidity 90.0 30 < th dose independent rect. 19 13
781 53.29 wind 9.0 30 < th dose independent rect. 6 15
782 53.29 temperature 10.0 30 > th dose independent rect. 6 15
784 53.29 atmosphere 1015.0 30 < th dose independent rect. 6 15
797 53.30 atmosphere 1000.0 270 > th dose independent rect. 11 10
802 53.30 radiation 20.0 10 < th dose dependent rect. 6 1
824 53.31 humidity 90.0 30 < th dose independent rect. 14 18
825 53.31 temperature 30.0 90 < th dose independent rect. 7 23
836 53.31 temperature 10.0 270 > th dose dependent rect. 11 10
841 53.32 wind 9.0 720 < th dose independent rect. 7 2
842 53.32 temperature 10.0 720 > th dose independent rect. 7 2
847 53.32 atmosphere 1015.0 720 < th dose independent rect. 7 2
861 53.32 temperature 10.0 720 > th dose independent rect. 9 22
888 53.33 atmosphere 1005.0 10 > th dose independent rect. 8 6
889 53.33 precipitation 0.1 30 < th dose independent rect. 21 9
892 53.33 radiation 1.0 90 < th dose independent rect. 21 15
893 53.33 wind 3.0 30 < th dose dependent rect. 6 1
894 53.33 temperature 10.0 720 > th dose dependent rect. 20 1
901 53.33 precipitation 0.1 30 < th dose dependent rect. 21 9
904 53.34 wind 3.0 30 < th dose independent rect. 6 1
906 53.34 wind 1.0 720 > th dose independent rect. 7 2
907 53.34 precipitation 0.1 720 < th dose independent rect. 7 2
926 53.34 precipitation 0.1 720 < th dose dependent rect. 7 2
930 53.35 wind 1.0 90 > th dose independent rect. 6 1
932 53.35 temperature 25.0 10 > th dose independent rect. 5 3
960 53.35 wind 1.0 90 > th dose dependent rect. 6 1
965 53.35 temperature 10.0 90 > th dose dependent rect. 13 9