BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0438500 Os10g0438500|AK103093
         (262 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G35930.1  | chr4:17019482-17020744 FORWARD LENGTH=322          194   4e-50
AT4G21510.1  | chr4:11446193-11447025 REVERSE LENGTH=226           55   3e-08
AT1G61340.2  | chr1:22628526-22629741 FORWARD LENGTH=232           51   6e-07
AT4G05010.1  | chr4:2567474-2568162 FORWARD LENGTH=165             50   2e-06

>AT4G35930.1 | chr4:17019482-17020744 FORWARD LENGTH=322
          Length = 321

 Score =  194 bits (493), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 128/299 (42%), Positives = 165/299 (55%), Gaps = 63/299 (21%)

Query: 21  YLKPGALAQIRYSRSTS--------------------RDIGKKRI----LLNVDKDELPQ 56
           YLKPGAL Q+ YS++++                     D+GKKR+    + +   +++  
Sbjct: 27  YLKPGALVQLCYSKASAAKSCNELGKKRVPVFDTKSCNDLGKKRVPVFDIKHARNNKMAV 86

Query: 57  EEVAFENTEPMMSP----KR------------------------LNFEPFSGTKGQVMPI 88
           E++    +  M+SP    KR                        L   P        +  
Sbjct: 87  EQLNSPKSPLMLSPVNVVKRSTLVRPMKFDDLQVESNNTCKKSPLMLSPMGIVMQNTLLR 146

Query: 89  TPKTPQSDELSDGHSRLESLPLELLIKIICCLHHDQLNIVFHVSKRIRKAVELARQYHFN 148
           TPKTPQ+D      S+LESLP++LL+KI+C LHHDQL  VFHVS+RIR A  LARQYHFN
Sbjct: 147 TPKTPQADPCV-SESQLESLPMDLLVKIVCHLHHDQLKAVFHVSQRIRMATILARQYHFN 205

Query: 149 YTTPDRSRQELLQHTTPLPTEHWPFMSRIDGKDVRISTPRTPKAPKHAPR-LARLELLDF 207
           YTTPDRSRQE+L+  TP+P   WPF  R DG    +S+P TPKAPKHAPR  +R +L + 
Sbjct: 206 YTTPDRSRQEMLRVMTPVPINRWPF-RRGDGNPTMVSSPHTPKAPKHAPRPPSRTKLAEM 264

Query: 208 KPITAVLFPDT--FPSKRLRRSMPPGLPRPV---SKAASSTRVLLYEEELCEAVAQNKL 261
           K ITAVLF D   FPS+ +   +P  L RP      A    RVL YE+ELC+AVAQN L
Sbjct: 265 KQITAVLFQDQTPFPSRCI---VPSVLQRPTLFKPMAPKHPRVLFYEDELCQAVAQNNL 320



>AT4G21510.1 | chr4:11446193-11447025 REVERSE LENGTH=226
          Length = 225

 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 38/54 (70%)

Query: 103 SRLESLPLELLIKIICCLHHDQLNIVFHVSKRIRKAVELARQYHFNYTTPDRSR 156
           SRLE LP +LLI++IC + H+ L  +  VSK IR+A  +A+  HF YTTP ++R
Sbjct: 122 SRLECLPQDLLIRVICGVDHEDLKSLKLVSKSIREASLVAKTLHFAYTTPKKTR 175



>AT1G61340.2 | chr1:22628526-22629741 FORWARD LENGTH=232
          Length = 231

 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 33/44 (75%)

Query: 112 LLIKIICCLHHDQLNIVFHVSKRIRKAVELARQYHFNYTTPDRS 155
           ++++IIC + H+ L  +FHVSK IR+A  +A+Q HF Y+TP ++
Sbjct: 134 VIVRIICGVEHEDLKQLFHVSKTIREATMIAKQSHFAYSTPRKT 177



>AT4G05010.1 | chr4:2567474-2568162 FORWARD LENGTH=165
          Length = 164

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 39/62 (62%)

Query: 91  KTPQSDELSDGHSRLESLPLELLIKIICCLHHDQLNIVFHVSKRIRKAVELARQYHFNYT 150
           K P  +      S LE+L  ++LI+++C + H+ L  +  VSK IRKAV  A++ HF+Y+
Sbjct: 50  KRPSHETTESCRSLLETLHQDILIRVLCHVDHEDLATLKRVSKTIRKAVIEAKKSHFDYS 109

Query: 151 TP 152
           TP
Sbjct: 110 TP 111



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,061,139
Number of extensions: 267881
Number of successful extensions: 712
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 708
Number of HSP's successfully gapped: 4
Length of query: 262
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 165
Effective length of database: 8,447,217
Effective search space: 1393790805
Effective search space used: 1393790805
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)