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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0429700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.27 (0.0436) R2 : 0.162
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -1.62 (0.173) R2dE : 0.181 R2E : 0.111
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.461 (0.0954) R2dN8 : 0.0512 R2N8 : -0.0191
σ : 0.811
deviance : 302.86
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 89.67
memory length : 16169
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 6.42
open length of G : 8.62

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
282.52 0.79 5.25 0.917 0.457 -1.7 0.834 -1.19 -0.416 9.9 90.42 4244 5.95 9.23
284.8 0.786 5.27 0.822 0.464 -1.72 0.852 -- -0.468 9.93 90.25 4184 5.95 8.91
285.03 0.786 5.25 0.954 0.456 -1.71 -- -1.16 -0.414 10.3 90.47 4228 5.92 9.2
286.68 0.789 5.26 0.788 0.433 -1.61 -- -- -0.453 10.6 89.9 4163 5.95 8.81
297.03 0.803 5.26 0.947 -- -1.67 -- -1.09 -0.403 -- 90.25 4163 5.91 9.22
331.94 0.854 5.17 0.707 0.435 -- 0.826 -- -0.0585 9.68 -- -- -- --
334.38 0.856 5.17 0.74 0.43 -- -- -- -0.0558 10.1 -- -- -- --
298.43 0.805 5.26 0.768 -- -1.58 -- -- -0.437 -- 89.72 4154 5.95 8.82
294.33 0.799 5.27 -- 0.421 -1.78 -- -- -0.428 10.1 91.12 5333 7.3 7.74
345.55 0.869 5.18 0.735 -- -- -- -- -0.0565 -- -- -- -- --
348.83 0.874 5.19 -- 0.427 -- -- -- -0.138 10 -- -- -- --
302.86 0.811 5.27 -- -- -1.62 -- -- -0.461 -- 89.67 16169 6.42 8.62
359.78 0.885 5.2 -- -- -- -- -- -0.138 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 274.09 humidity 90.0 14400 < th dose independent rect. 6 1
2 274.21 humidity 90.0 14400 > th dose independent rect. 6 1
5 280.15 humidity 90.0 14400 > th dose dependent rect. 6 2
8 281.53 humidity 90.0 14400 > th dose dependent rect. 6 9
14 282.12 humidity 90.0 14400 > th dose dependent rect. 5 11
33 284.09 humidity 80.0 14400 > th dose dependent rect. 23 17
36 284.19 humidity 80.0 14400 > th dose dependent sin 5 NA
37 284.20 humidity 70.0 14400 > th dose dependent rect. 23 14
62 284.54 humidity 90.0 14400 > th dose dependent sin 2 NA
68 284.62 humidity 70.0 14400 > th dose dependent rect. 20 17
75 284.71 humidity 80.0 14400 > th dose dependent rect. 20 20
76 284.72 humidity 80.0 14400 > th dose dependent rect. 2 9
82 284.77 humidity 80.0 14400 > th dose dependent rect. 1 11
184 285.83 humidity 90.0 14400 > th dose independent rect. 5 10
223 286.27 humidity 80.0 14400 > th dose dependent rect. 23 22
246 286.53 humidity 80.0 14400 > th dose independent rect. 18 22
296 286.90 humidity 80.0 14400 > th dose dependent rect. 13 22
302 286.93 humidity 80.0 14400 > th dose dependent rect. 5 23
303 286.93 humidity 80.0 14400 > th dose dependent rect. 9 23
310 286.98 humidity 90.0 14400 > th dose independent rect. 3 13
311 286.98 humidity 90.0 14400 < th dose independent rect. 3 13
313 286.99 humidity 80.0 14400 > th dose dependent no NA NA
331 287.10 humidity 80.0 14400 > th dose independent rect. 9 23
341 287.13 humidity 80.0 14400 > th dose independent rect. 6 20
354 287.18 humidity 90.0 14400 < th dose independent rect. 6 10
366 287.23 humidity 80.0 14400 > th dose dependent rect. 3 23
381 287.29 wind 7.0 43200 > th dose dependent rect. 18 1
386 287.31 humidity 80.0 14400 > th dose independent rect. 9 18
402 287.37 humidity 70.0 14400 > th dose independent rect. 14 1
429 287.46 humidity 80.0 14400 > th dose independent rect. 13 23
459 287.56 humidity 80.0 14400 > th dose independent rect. 15 23
463 287.57 humidity 70.0 14400 > th dose dependent rect. 20 5
470 287.60 humidity 50.0 14400 > th dose dependent rect. 20 5
474 287.61 humidity 90.0 14400 > th dose independent sin 3 NA
475 287.61 wind 9.0 43200 < th dose independent rect. 18 1
507 287.70 humidity 80.0 14400 > th dose independent no NA NA
531 287.77 wind 9.0 43200 > th dose independent rect. 18 1
553 287.83 humidity 80.0 14400 > th dose independent rect. 15 9
584 287.94 humidity 80.0 14400 > th dose independent sin 16 NA
602 288.00 humidity 70.0 14400 > th dose dependent rect. 19 7
605 288.01 humidity 80.0 14400 < th dose independent rect. 6 19
660 288.15 humidity 80.0 14400 < th dose independent rect. 18 22
689 288.24 humidity 80.0 14400 > th dose independent rect. 22 23
702 288.28 humidity 80.0 14400 > th dose independent rect. 18 6
745 288.39 precipitation 0.1 4320 < th dose independent rect. 1 9
746 288.39 humidity 80.0 14400 < th dose independent rect. 9 23
748 288.39 precipitation 0.1 4320 < th dose dependent rect. 1 9
775 288.48 wind 3.0 14400 > th dose dependent rect. 14 1
795 288.54 humidity 90.0 14400 < th dose independent sin 3 NA
796 288.54 precipitation 0.1 4320 > th dose independent rect. 1 9
815 288.59 humidity 80.0 14400 < th dose independent rect. 9 18
873 288.73 humidity 90.0 14400 > th dose independent rect. 1 16
890 288.78 humidity 70.0 14400 > th dose dependent rect. 20 1
892 288.79 humidity 80.0 14400 < th dose independent rect. 13 23
911 288.84 humidity 80.0 14400 < th dose independent no NA NA
959 288.93 wind 9.0 14400 < th dose dependent rect. 14 1
997 289.03 humidity 90.0 14400 > th dose independent rect. 23 19