BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0429700 Os10g0429700|AK069463
         (880 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               59   1e-08
AT3G20980.1  | chr3:7355963-7357966 FORWARD LENGTH=406             54   3e-07
AT3G21000.1  | chr3:7363921-7365138 FORWARD LENGTH=406             52   2e-06

>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%)

Query: 679 NQSVVGTARSMLKAKGLPGMFWGEAINTAVYLLNRSSSKGIGGKTPYALWNGVPPAVHHL 738
           N++++   RSML   GLP  F  +A NTAV+++N+  S  I    P  +W    P   +L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 739 RTFGCVAHVKTTTPNLK 755
           R FGCVA++      LK
Sbjct: 62  RRFGCVAYIHCDEGKLK 78



>AT3G20980.1 | chr3:7355963-7357966 FORWARD LENGTH=406
          Length = 405

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 19/130 (14%)

Query: 379 WIMDSGASNHMTGSRMAFADLDTNITGNVRLGDG-----SVVRIAGRGTILFACKNGEHR 433
           W++ S  SNHMT     F  LD +    V+   G     +V  + G G + F    G ++
Sbjct: 269 WLISSTNSNHMTPHVKFFTTLDRSRKCKVKFISGDKSETTVAMVEGIGDVTFITNEG-NK 327

Query: 434 TLSNTYYLPRLTANIISIGQLDETGFKVLAE--DGIMRVWDEQRRLLARIPRTPGRLYML 491
           T+ N  Y+P +  N +S+ QL   GF+V  E   G   VWD          RT G+++  
Sbjct: 328 TIKNVLYVPGIEGNALSVSQLKRNGFEVSMERRTGCF-VWD----------RTTGKMFGK 376

Query: 492 DINLARPVCL 501
           ++   R  CL
Sbjct: 377 NMWEKRGFCL 386



>AT3G21000.1 | chr3:7363921-7365138 FORWARD LENGTH=406
          Length = 405

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 42/84 (50%)

Query: 371 AADHDPGRWIMDSGASNHMTGSRMAFADLDTNITGNVRLGDGSVVRIAGRGTILFACKNG 430
           A  +D   WI+   A  +MT     F  LD      V   DG+V+ + G+G +    K G
Sbjct: 272 AKTYDDDIWIIHKMAPINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEG 331

Query: 431 EHRTLSNTYYLPRLTANIISIGQL 454
           + +T+ N  ++P L  N++S G++
Sbjct: 332 KKKTIRNVIFVPGLNRNVLSFGKM 355



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,741,837
Number of extensions: 700363
Number of successful extensions: 1666
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1666
Number of HSP's successfully gapped: 3
Length of query: 880
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 773
Effective length of database: 8,173,057
Effective search space: 6317773061
Effective search space used: 6317773061
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 116 (49.3 bits)