Os10g0423600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TRAF-like domain containing protein.
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Os10g0423600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TRAF-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 180.33 | 0.631 | 5.82 | 0.323 | 0.522 | -1.68 | 0.542 | -1.43 | -0.702 | 10.7 | 21.59 | 1577 | -- | -- |
| 183.81 | 0.631 | 5.77 | 0.61 | 0.518 | -1.49 | 0.551 | -- | -0.609 | 10.6 | 22 | 1582 | -- | -- |
| 181.56 | 0.628 | 5.82 | 0.335 | 0.518 | -1.68 | -- | -1.45 | -0.703 | 10.7 | 21.57 | 1576 | -- | -- |
| 184.71 | 0.633 | 5.76 | 0.737 | 0.511 | -1.56 | -- | -- | -0.597 | 10.7 | 21.71 | 1685 | -- | -- |
| 189.94 | 0.642 | 5.82 | 0.285 | -- | -1.48 | -- | -0.969 | -0.698 | -- | 21.84 | 865 | -- | -- |
| 259.94 | 0.756 | 5.87 | 0.0335 | 0.528 | -- | 0.473 | -- | -1.08 | 10.8 | -- | -- | -- | -- |
| 260.88 | 0.756 | 5.87 | 0.0528 | 0.526 | -- | -- | -- | -1.08 | 10.8 | -- | -- | -- | -- |
| 192.14 | 0.646 | 5.78 | 0.52 | -- | -1.4 | -- | -- | -0.628 | -- | 22.08 | 831 | -- | -- |
| 193.55 | 0.648 | 5.78 | -- | 0.509 | -1.31 | -- | -- | -0.704 | 10.5 | 22.11 | 1501 | -- | -- |
| 278 | 0.779 | 5.89 | 0.042 | -- | -- | -- | -- | -1.08 | -- | -- | -- | -- | -- |
| 260.95 | 0.756 | 5.87 | -- | 0.525 | -- | -- | -- | -1.08 | 10.8 | -- | -- | -- | -- |
| 198.08 | 0.655 | 5.8 | -- | -- | -1.26 | -- | -- | -0.706 | -- | 22.26 | 766 | -- | -- |
| 278.05 | 0.778 | 5.89 | -- | -- | -- | -- | -- | -1.09 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 186.23 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 13 | 14 |
| 6 | 186.52 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 16 | 6 |
| 15 | 186.79 | temperature | 25.0 | 1440 | < th | dose dependent | sin | 16 | NA |
| 31 | 187.13 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 9 | 20 |
| 32 | 187.14 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 23 | 22 |
| 96 | 188.75 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 125 | 189.27 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 205 | 190.73 | temperature | 25.0 | 720 | < th | dose dependent | no | NA | NA |
| 227 | 190.98 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 1 | 1 |
| 271 | 191.70 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 1 | 2 |
| 316 | 192.21 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 324 | 192.26 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 1 | 1 |
| 465 | 193.68 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 24 | 5 |
| 489 | 193.85 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 2 |
| 501 | 193.94 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 509 | 194.04 | temperature | 20.0 | 1440 | < th | dose independent | rect. | 5 | 1 |
| 542 | 194.33 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 21 | 8 |
| 675 | 195.30 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 681 | 195.34 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 18 | 12 |
| 682 | 195.35 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 683 | 195.35 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 21 | 1 |
| 695 | 195.41 | temperature | 20.0 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 742 | 195.79 | temperature | 20.0 | 1440 | > th | dose independent | rect. | 5 | 1 |
| 763 | 195.98 | wind | 5.0 | 4320 | > th | dose dependent | rect. | 20 | 7 |
| 905 | 197.07 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 911 | 197.10 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 20 | 3 |
| 912 | 197.10 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 20 | 3 |