Os10g0420000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0420000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 30.07 | 0.258 | 9.63 | 1.22 | 0.265 | -0.407 | -0.314 | 0.0326 | 0.475 | 0.783 | 25.96 | 1271 | -- | -- |
| 30.07 | 0.255 | 9.63 | 1.22 | 0.265 | -0.406 | -0.311 | -- | 0.473 | 0.785 | 26.15 | 1270 | -- | -- |
| 30.45 | 0.257 | 9.63 | 1.23 | 0.265 | -0.404 | -- | -0.0318 | 0.473 | 1.17 | 25.93 | 1283 | -- | -- |
| 30.45 | 0.257 | 9.63 | 1.23 | 0.266 | -0.406 | -- | -- | 0.475 | 1.13 | 25.85 | 1277 | -- | -- |
| 32.36 | 0.265 | 9.62 | 1.25 | -- | -0.481 | -- | 0.352 | 0.483 | -- | 26.34 | 1813 | -- | -- |
| 36.62 | 0.284 | 9.65 | 1.16 | 0.184 | -- | -0.353 | -- | 0.387 | 0.88 | -- | -- | -- | -- |
| 37.07 | 0.285 | 9.64 | 1.17 | 0.19 | -- | -- | -- | 0.388 | 1.64 | -- | -- | -- | -- |
| 32.39 | 0.265 | 9.62 | 1.24 | -- | -0.513 | -- | -- | 0.481 | -- | 26.09 | 1744 | -- | -- |
| 42.4 | 0.303 | 9.68 | -- | 0.186 | -0.998 | -- | -- | 0.155 | 2.18 | 56.27 | 24598 | -- | -- |
| 39.27 | 0.293 | 9.64 | 1.18 | -- | -- | -- | -- | 0.392 | -- | -- | -- | -- | -- |
| 73.36 | 0.401 | 9.67 | -- | 0.211 | -- | -- | -- | 0.257 | 1.82 | -- | -- | -- | -- |
| 44.21 | 0.31 | 9.69 | -- | -- | -1 | -- | -- | 0.16 | -- | 55.95 | 24833 | -- | -- |
| 76.07 | 0.407 | 9.67 | -- | -- | -- | -- | -- | 0.261 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 26.66 | wind | 9 | 43200 | > th | dose independent | rect. | 10 | 3 |
| 2 | 26.73 | wind | 7 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 3 | 26.74 | wind | 9 | 43200 | < th | dose independent | rect. | 10 | 3 |
| 5 | 26.84 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 5 |
| 6 | 26.87 | wind | 9 | 43200 | < th | dose dependent | rect. | 5 | 2 |
| 8 | 26.90 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 2 |
| 14 | 26.96 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 10 |
| 23 | 27.03 | wind | 7 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 24 | 27.04 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 12 |
| 28 | 27.06 | wind | 1 | 43200 | > th | dose dependent | rect. | 21 | 11 |
| 35 | 27.10 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 40 | 27.12 | wind | 3 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 48 | 27.14 | wind | 3 | 43200 | < th | dose independent | rect. | 2 | 11 |
| 57 | 27.16 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 13 |
| 60 | 27.17 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 13 |
| 62 | 27.19 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 68 | 27.19 | wind | 9 | 43200 | < th | dose dependent | sin | 7 | NA |
| 70 | 27.19 | wind | 9 | 43200 | < th | dose dependent | rect. | 22 | 15 |
| 71 | 27.20 | wind | 3 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 73 | 27.20 | wind | 9 | 43200 | < th | dose dependent | rect. | 4 | 9 |
| 83 | 27.23 | wind | 3 | 43200 | < th | dose independent | rect. | 4 | 8 |
| 91 | 27.24 | wind | 1 | 43200 | > th | dose dependent | sin | 7 | NA |
| 93 | 27.24 | wind | 1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 94 | 27.24 | wind | 9 | 43200 | < th | dose dependent | rect. | 3 | 11 |
| 100 | 27.25 | wind | 9 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 103 | 27.25 | wind | 1 | 43200 | > th | dose dependent | rect. | 3 | 11 |
| 128 | 27.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 22 | 15 |
| 163 | 27.32 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 9 |
| 185 | 27.34 | wind | 3 | 43200 | > th | dose independent | sin | 6 | NA |
| 230 | 27.38 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 7 |
| 258 | 27.41 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 20 |
| 260 | 27.41 | wind | 9 | 43200 | < th | dose dependent | rect. | 1 | 7 |
| 267 | 27.42 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 7 |
| 270 | 27.42 | wind | 9 | 43200 | < th | dose independent | rect. | 21 | 17 |
| 286 | 27.43 | wind | 3 | 43200 | > th | dose independent | rect. | 23 | 9 |
| 303 | 27.45 | wind | 3 | 43200 | < th | dose independent | sin | 6 | NA |
| 308 | 27.45 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 20 |
| 310 | 27.45 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 7 |
| 334 | 27.47 | wind | 9 | 43200 | < th | dose independent | rect. | 1 | 13 |
| 408 | 27.53 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 464 | 27.57 | wind | 9 | 43200 | > th | dose dependent | rect. | 10 | 8 |
| 523 | 27.62 | wind | 9 | 43200 | < th | dose independent | sin | 2 | NA |
| 528 | 27.62 | wind | 9 | 43200 | > th | dose independent | rect. | 1 | 14 |
| 736 | 27.78 | wind | 9 | 43200 | > th | dose independent | sin | 2 | NA |
| 769 | 27.81 | wind | 9 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 838 | 27.88 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 859 | 27.90 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 19 |
| 877 | 27.92 | wind | 7 | 43200 | > th | dose dependent | rect. | 21 | 17 |
| 924 | 27.98 | wind | 9 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 944 | 28.00 | humidity | 80 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 945 | 28.00 | radiation | 10 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 951 | 28.00 | wind | 9 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 964 | 28.01 | wind | 9 | 43200 | < th | dose independent | rect. | 4 | 20 |
| 973 | 28.02 | humidity | 80 | 43200 | < th | dose independent | rect. | 5 | 2 |