BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0420000 Os10g0420000|AK106414
         (236 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G20350.2  | chr4:10988391-10989733 FORWARD LENGTH=242          229   1e-60
AT1G31600.1  | chr1:11313376-11315199 REVERSE LENGTH=432           52   4e-07

>AT4G20350.2 | chr4:10988391-10989733 FORWARD LENGTH=242
          Length = 241

 Score =  229 bits (583), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 121/236 (51%), Positives = 149/236 (63%), Gaps = 23/236 (9%)

Query: 24  YAVGPIPTLLYVPGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWGGVVHEKGLLPQA 83
           + VG  PT+ Y+PGFI+D EQ+QLL+HIY A   KWK+LKNRRLQNWGG+VHEKGL+PQ 
Sbjct: 6   FRVGLTPTVFYIPGFITDEEQTQLLNHIYGASGSKWKTLKNRRLQNWGGMVHEKGLVPQE 65

Query: 84  LPSWLTKITDRICQWTGLFPSAINHVLINEYHPNQGIMPHQDGPAYFPVVAIISLASPVV 143
           LP WLTKIT  I + +GLFPSAINHVLINEYHP+QGIMPHQDGPAYFPVVAI+SL SPVV
Sbjct: 66  LPPWLTKITAEIHESSGLFPSAINHVLINEYHPDQGIMPHQDGPAYFPVVAILSLGSPVV 125

Query: 144 IDFTPHQRLK-GEDFTDPQNAHSGESQATTTESNG----------------SHNLEGANE 186
           +DFTPH RL+ G+ +     +   ES A   +S                  S  L G ++
Sbjct: 126 MDFTPHLRLRSGDGYISKDQSPCAESCAPERDSFSVLLMPQSLLIFKDDAYSDFLHGISD 185

Query: 187 TDPAXXXXXXXXXXXXIFKDQAYTG------YRRTARRVSLTCRLVLKVHKKLFKM 236
           +                + ++  +       + R   RVSLTCRLV KV K LF+ 
Sbjct: 186 SPTQCYNQVVNEAEALAYSNEEDSRKDGDKIFHRDQTRVSLTCRLVPKVRKNLFRF 241



>AT1G31600.1 | chr1:11313376-11315199 REVERSE LENGTH=432
          Length = 431

 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 26/135 (19%)

Query: 29  IPTLLYVPGFISDAEQSQLLHHIYQAPAPKWKSLKNRRLQNWG--------GVVHEKGLL 80
           IP L  +P F++ AE+ QLL  +    A  W  L  RR+Q++G         V  +K L 
Sbjct: 210 IPGLFLLPDFVTVAEEQQLLAAV---DARHWIGLAKRRVQHYGYEFCYGTRNVDTKKRL- 265

Query: 81  PQALPSWLTKITDRICQWTGLFPS--------AINHVLINEYHPNQGIMPHQDGPAYFP- 131
              LPS+++ I +RI     LFP+         ++ + +NEY    G+ PH D  + F  
Sbjct: 266 -GELPSFVSPILERI----YLFPNFDNGSASLNLDQLTVNEYPSGVGLSPHIDTHSAFED 320

Query: 132 VVAIISLASPVVIDF 146
            +  +SLA P +++F
Sbjct: 321 CIFSLSLAGPCIMEF 335



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,816,824
Number of extensions: 191667
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 411
Number of HSP's successfully gapped: 2
Length of query: 236
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 141
Effective length of database: 8,502,049
Effective search space: 1198788909
Effective search space used: 1198788909
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 110 (47.0 bits)