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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0419200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, C2H2-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.2 (0.0348) R2 : 0.635
β1 : 1.18 (0.13) R2dD : 0.0739 R2D : 0.111
β2 : 2.29 (0.0981) R2dC : 0.604 R2C : 0.252
β3 : -3.16 (0.232) R2dE : 0.234 R2E : -0.0598
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.276 (0.0786) R2dN8 : 0.0153 R2N8 : 0.033
σ : 0.639
deviance : 188.05
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_____
C
peak time of C : 2.34
E
wheather : temperature
threshold : 27.7
memory length : 609
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 9.36
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
187.78 0.644 5.21 1.08 2.33 -3.12 -0.36 0.794 0.253 2.39 27.9 607 9.15 --
188.05 0.639 5.21 1.18 2.3 -3.18 -0.042 -- 0.273 2.34 27.7 606 9.36 --
188.04 0.639 5.21 1.13 2.31 -3.1 -- 0.518 0.272 2.38 27.77 605 9.23 --
188.05 0.639 5.2 1.18 2.29 -3.16 -- -- 0.276 2.34 27.7 609 9.36 --
245.29 0.729 5.2 1.67 -- -2.46 -- -1.74 0.487 -- 59.03 1112 1.7 --
262.73 0.76 5.11 1.68 1.58 -- 0.502 -- 0.678 1.97 -- -- -- --
263.69 0.76 5.12 1.67 1.58 -- -- -- 0.675 1.97 -- -- -- --
230.8 0.708 5.17 1.16 -- -2.78 -- -- 0.381 -- 72.37 1268 2.6 --
220.45 0.692 5.25 -- 2.26 -3.81 -- -- 0.0772 2.23 27.79 717 10.7 --
414.1 0.951 5.1 1.73 -- -- -- -- 0.712 -- -- -- -- --
337.13 0.859 5.16 -- 1.61 -- -- -- 0.49 1.99 -- -- -- --
261.72 0.753 5.23 -- -- -3.21 -- -- 0.111 -- 79.36 1330 3.08 --
493.48 1.04 5.14 -- -- -- -- -- 0.52 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 185.95 temperature 15 720 > th dose dependent rect. 18 7
2 186.68 temperature 15 720 > th dose dependent rect. 18 5
3 186.81 temperature 30 720 < th dose dependent rect. 15 10
15 188.26 temperature 30 720 < th dose dependent rect. 19 6
42 190.64 temperature 30 720 < th dose dependent sin 16 NA
66 192.85 temperature 30 720 < th dose dependent rect. 21 2
105 195.11 temperature 25 720 < th dose independent rect. 13 11
131 196.18 temperature 20 720 > th dose dependent sin 15 NA
132 196.19 temperature 10 720 > th dose dependent sin 15 NA
189 198.05 temperature 25 270 < th dose dependent sin 12 NA
200 198.28 temperature 30 270 < th dose dependent rect. 19 14
228 199.28 temperature 25 720 < th dose independent sin 17 NA
242 199.43 temperature 25 720 > th dose independent sin 17 NA
247 199.61 temperature 25 270 < th dose dependent rect. 15 17
280 200.23 temperature 25 270 < th dose dependent rect. 11 21
282 200.27 temperature 25 720 > th dose independent rect. 13 11
299 200.54 temperature 10 720 > th dose dependent rect. 13 16
307 200.73 temperature 25 720 > th dose independent rect. 11 14
314 200.84 temperature 30 10 < th dose dependent rect. 21 13
361 201.72 temperature 10 270 > th dose dependent sin 11 NA
392 202.16 temperature 25 720 < th dose independent rect. 12 20
401 202.32 temperature 20 270 > th dose independent rect. 16 13
435 202.91 temperature 15 720 > th dose dependent rect. 11 17
496 203.47 temperature 25 10 < th dose dependent sin 10 NA
557 204.23 temperature 20 10 > th dose independent rect. 18 12
562 204.27 temperature 25 720 > th dose independent rect. 18 3
761 206.42 temperature 25 10 < th dose dependent rect. 20 8
818 206.93 temperature 25 720 < th dose independent rect. 5 20
906 207.81 temperature 10 30 > th dose dependent sin 10 NA
931 208.06 temperature 25 10 < th dose dependent rect. 18 17