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Os10g0406800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Armadillo-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.2 (0.0162) R2 : 0.369
β1 : 0.841 (0.0594) R2dD : 0.288 R2D : 0.158
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.368 (0.0346) R2dN8 : 0.21 R2N8 : 0.0804
σ : 0.304
deviance : 42.41
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.16 0.271 11.2 0.253 0.0256 0.368 0.37 -1.32 0.14 1.7 20.6 4567 -- --
33.76 0.271 11.2 0.357 0.028 0.789 0.425 -- 0.19 1.61 18.94 6780 -- --
33.7 0.27 11.2 0.241 0.024 0.363 -- -1.34 0.139 1.64 20.61 4570 -- --
34.33 0.273 11.2 0.303 0.00662 0.82 -- -- 0.169 1.67 19 7797 -- --
33.74 0.271 11.2 0.24 -- 0.368 -- -1.33 0.138 -- 20.7 4570 -- --
41.74 0.303 11.2 0.853 0.0297 -- 0.386 -- 0.37 1.24 -- -- -- --
42.35 0.305 11.2 0.84 0.0312 -- -- -- 0.368 2.37 -- -- -- --
34.33 0.273 11.2 0.302 -- 0.814 -- -- 0.173 -- 18.95 7938 -- --
35.43 0.277 11.2 -- 0.0314 0.941 -- -- 0.118 1.59 18.5 14867 -- --
42.41 0.304 11.2 0.841 -- -- -- -- 0.368 -- -- -- -- --
60.93 0.365 11.2 -- 0.0475 -- -- -- 0.274 2.68 -- -- -- --
35.02 0.276 11.2 -- -- 0.923 -- -- 0.122 -- 17.1 24799 -- --
61.06 0.365 11.2 -- -- -- -- -- 0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 29.66 temperature 20.0 270 > th dose dependent rect. 20 18
3 29.82 temperature 15.0 270 > th dose dependent rect. 22 15
46 31.45 temperature 25.0 270 > th dose independent rect. 20 18
51 31.64 wind 1.0 14400 < th dose independent rect. 22 4
77 32.11 wind 1.0 43200 > th dose independent rect. 24 1
78 32.11 wind 3.0 43200 < th dose dependent rect. 8 1
79 32.12 wind 1.0 43200 > th dose independent rect. 23 3
81 32.13 wind 1.0 43200 < th dose dependent rect. 12 14
87 32.21 wind 1.0 43200 < th dose dependent rect. 10 17
89 32.23 temperature 25.0 90 > th dose independent rect. 9 6
96 32.30 temperature 20.0 1440 < th dose independent rect. 4 2
100 32.34 wind 1.0 43200 > th dose independent rect. 16 10
104 32.38 wind 1.0 43200 < th dose independent rect. 16 10
106 32.40 wind 1.0 43200 < th dose dependent rect. 8 19
110 32.43 temperature 20.0 1440 > th dose independent rect. 4 3
116 32.47 temperature 30.0 270 < th dose dependent rect. 3 8
122 32.50 temperature 20.0 270 > th dose dependent sin 7 NA
123 32.50 temperature 15.0 270 > th dose dependent rect. 7 7
125 32.52 wind 1.0 43200 < th dose dependent rect. 15 11
126 32.53 wind 5.0 43200 < th dose independent rect. 10 1
127 32.53 wind 1.0 43200 < th dose independent rect. 14 12
130 32.54 humidity 70.0 43200 < th dose dependent rect. 24 15
133 32.55 humidity 70.0 43200 < th dose dependent sin 6 NA
134 32.55 humidity 60.0 43200 < th dose dependent rect. 13 1
137 32.56 temperature 25.0 270 > th dose independent rect. 9 4
147 32.58 wind 3.0 43200 < th dose independent rect. 8 2
158 32.59 wind 3.0 43200 > th dose dependent rect. 10 2
163 32.60 temperature 20.0 4320 > th dose independent rect. 17 10
164 32.60 temperature 20.0 4320 < th dose independent rect. 17 10
165 32.60 wind 1.0 43200 > th dose independent rect. 14 12
174 32.61 precipitation 0.1 43200 < th dose independent rect. 7 6
179 32.61 precipitation 0.1 43200 < th dose dependent rect. 7 6
182 32.62 temperature 20.0 4320 > th dose independent rect. 16 14
183 32.62 temperature 20.0 4320 < th dose independent rect. 16 14
184 32.62 wind 1.0 43200 < th dose dependent sin 17 NA
192 32.63 wind 5.0 43200 > th dose independent rect. 9 3
198 32.64 wind 5.0 43200 > th dose independent rect. 10 1
199 32.64 wind 5.0 43200 > th dose independent rect. 8 5
201 32.64 precipitation 0.1 43200 > th dose independent rect. 7 6
222 32.65 precipitation 0.1 43200 > th dose dependent rect. 7 6
270 32.69 precipitation 0.1 43200 < th dose independent rect. 8 3
276 32.69 precipitation 0.1 43200 < th dose dependent rect. 8 3
287 32.70 temperature 20.0 4320 < th dose independent rect. 18 5
301 32.71 humidity 90.0 43200 < th dose dependent rect. 8 2
307 32.72 humidity 80.0 43200 > th dose independent rect. 5 5
309 32.72 humidity 70.0 43200 > th dose independent rect. 2 12
311 32.72 humidity 70.0 43200 < th dose independent rect. 17 18
322 32.73 temperature 20.0 4320 > th dose independent sin 14 NA
343 32.74 temperature 20.0 4320 < th dose independent sin 13 NA
367 32.75 humidity 70.0 43200 > th dose independent rect. 24 20
368 32.75 humidity 70.0 43200 < th dose independent rect. 23 21
391 32.76 humidity 70.0 43200 < th dose dependent no NA NA
400 32.76 humidity 70.0 43200 < th dose dependent rect. 7 22
403 32.76 humidity 70.0 43200 < th dose dependent rect. 11 23
404 32.76 humidity 70.0 43200 < th dose dependent rect. 13 23
409 32.77 humidity 70.0 43200 < th dose independent rect. 1 11
410 32.77 humidity 70.0 43200 < th dose independent rect. 1 13
413 32.77 humidity 70.0 43200 < th dose independent rect. 24 18
448 32.78 humidity 70.0 43200 < th dose dependent rect. 11 4
464 32.79 humidity 70.0 43200 > th dose independent rect. 18 2
476 32.79 humidity 70.0 43200 > th dose independent rect. 17 17
480 32.79 humidity 70.0 43200 > th dose independent rect. 17 19
491 32.79 wind 1.0 14400 < th dose dependent rect. 22 4
505 32.80 humidity 70.0 43200 > th dose independent sin 3 NA
507 32.80 humidity 70.0 43200 < th dose independent sin 4 NA
509 32.80 precipitation 0.1 43200 > th dose independent rect. 8 3
510 32.80 humidity 80.0 43200 < th dose independent rect. 4 6
530 32.80 precipitation 0.1 43200 > th dose dependent rect. 8 3
598 32.81 humidity 60.0 43200 < th dose dependent rect. 13 20
604 32.82 radiation 20.0 43200 > th dose independent rect. 9 1
608 32.82 humidity 70.0 43200 > th dose independent rect. 17 5
624 32.82 humidity 70.0 43200 < th dose independent rect. 4 23
654 32.83 humidity 70.0 43200 < th dose independent no NA NA
662 32.83 humidity 70.0 43200 > th dose independent rect. 18 15
669 32.83 humidity 70.0 43200 < th dose independent rect. 6 21
682 32.83 humidity 70.0 43200 < th dose independent rect. 9 23
697 32.84 temperature 20.0 4320 > th dose independent rect. 22 1
749 32.85 humidity 70.0 43200 < th dose independent rect. 17 6
811 32.86 humidity 70.0 43200 < th dose independent rect. 9 18
836 32.86 wind 1.0 14400 < th dose dependent rect. 21 7
849 32.87 temperature 20.0 4320 < th dose independent rect. 22 1
900 32.88 humidity 70.0 43200 > th dose independent no NA NA
934 32.88 temperature 15.0 90 > th dose dependent rect. 9 19
936 32.88 temperature 20.0 10 > th dose dependent rect. 9 20