BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0406800 Os10g0406800|AK065200
         (345 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14300.2  | chr1:4882654-4884686 REVERSE LENGTH=378            342   2e-94

>AT1G14300.2 | chr1:4882654-4884686 REVERSE LENGTH=378
          Length = 377

 Score =  342 bits (877), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 187/367 (50%), Positives = 226/367 (61%), Gaps = 45/367 (12%)

Query: 1   MADELDELLGFLSSPQPNVRGAAAGIVRGLTGDXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           M  EL+EL+ FLSSP P V+ AA  IV GLTG                            
Sbjct: 1   MVTELEELVEFLSSPSPPVKKAAVEIVSGLTGSEEGLQSLSKYSEILLPSLSQLLNESKE 60

Query: 61  XXXXXXXXXDSLVNLSQDGALSARLVSLGAVVAAMDVVAKRGGEQPGLARSLVMLLANLT 120
                     +LVNLSQ   L+ +++ +G +  AMD++ K    +  + R LVMLL NLT
Sbjct: 61  VSEPAA---QALVNLSQKCELAKKMIQMGLIKVAMDMLYK---PESCITRLLVMLLVNLT 114

Query: 121 QVDSGVAALLQVGDEKMQGLYVAKLVRSFCRXXXXXXXXDIFEHVASILVNISKVEAGRR 180
           Q+D GV++LLQ+ DEKM GL++ KLVRSFCR        D FEHV SILVNISK E GR+
Sbjct: 115 QLDDGVSSLLQIDDEKMHGLHIMKLVRSFCRSSGETAD-DQFEHVGSILVNISKTEDGRK 173

Query: 181 ILMEPKRGLLKQIIRQSDSTNQLRKKGVVSTIRNCCFEADTQIQNLLSLAEYIWPALLLP 240
           +L+EPKR LLKQIIRQ DSTNQLRKKGV  TIRNCCFEA  Q+QN+L ++E++WPALLLP
Sbjct: 174 LLLEPKRRLLKQIIRQFDSTNQLRKKGVAGTIRNCCFEAKNQLQNILLISEFLWPALLLP 233

Query: 241 VAGKKIYSEEDRSKMPPELANALSHEREAVENSEIRQQALEAIYMIV------------- 287
           VAG K YSE+D +KMPPEL +ALS ERE V + +IR Q LEAIY+I+             
Sbjct: 234 VAGSKTYSEQDVAKMPPELGSALSIEREPVTDPDIRVQTLEAIYLIILEVKHFSVSLSLL 293

Query: 288 -------------------------LQDEGRRAFWSVNGPRILQVGYEDEEDPKVMEAYE 322
                                    LQ+ GRRAFWSVNGPRILQ+GYE EEDPK M AYE
Sbjct: 294 VNSCEGPIKPKTYKRSSVMSKLLLMLQEAGRRAFWSVNGPRILQLGYEYEEDPKAMRAYE 353

Query: 323 LIGSLLV 329
            +GSLLV
Sbjct: 354 QVGSLLV 360



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,379,491
Number of extensions: 176360
Number of successful extensions: 501
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 2
Length of query: 345
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 246
Effective length of database: 8,392,385
Effective search space: 2064526710
Effective search space used: 2064526710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)