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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0402200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Origin recognition complex subunit 3, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.31 (0.0431) R2 : 0.000515
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.044 (0.0907) R2dN8 : 0.000666 R2N8 : 0.000515
σ : 0.811
deviance : 302.21
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
266.71 0.767 3.37 0.662 0.112 21.1 -0.057 47 0.114 11 1.461 98 4.02 1
275.76 0.773 3.3 0.598 0.0372 4.97 -0.462 -- 0.0894 14.1 1.48 107 3.62 1.5
266.73 0.761 3.37 0.66 0.112 21.1 -- 47.1 0.113 11 1.581 103 4.03 0.999
274.21 0.771 3.3 0.471 0.0663 4.44 -- -- 0.122 11.9 1.475 116 3.74 1.4
267.51 0.762 3.37 0.657 -- 21.1 -- 46.9 0.113 -- 1.827 101 4.04 1
297.29 0.808 3.3 0.374 0.137 -- -0.337 -- 0.0828 8.26 -- -- -- --
297.56 0.808 3.3 0.366 0.139 -- -- -- 0.0839 9.3 -- -- -- --
274.79 0.772 3.29 0.481 -- 4.28 -- -- 0.119 -- 1.657 118 3.74 1.39
278.47 0.777 3.29 -- 0.0902 4.53 -- -- 0.0711 10.2 0.5405 122 3.85 1.09
298.68 0.808 3.3 0.365 -- -- -- -- 0.0845 -- -- -- -- --
301.09 0.812 3.31 -- 0.139 -- -- -- 0.0432 9.1 -- -- -- --
278.94 0.778 3.31 -- -- 4.22 -- -- 0.0646 -- 3.363 131 3.8 1.12
302.21 0.811 3.31 -- -- -- -- -- 0.044 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 266.74 radiation 1.0 90 > th dose independent rect. 4 1
11 266.74 radiation 1.0 90 > th dose dependent rect. 4 1
21 277.69 radiation 1.0 10 < th dose dependent rect. 6 1
23 278.56 wind 1.0 10 < th dose dependent rect. 6 1
25 281.67 wind 1.0 10 < th dose dependent rect. 6 3
26 282.09 temperature 20.0 90 < th dose independent rect. 18 1
27 282.09 temperature 20.0 90 < th dose dependent rect. 18 1
31 282.24 wind 7.0 10 > th dose independent rect. 19 3
36 282.25 wind 7.0 10 > th dose dependent rect. 19 3
48 282.28 wind 5.0 10 > th dose dependent rect. 20 1
55 282.40 wind 7.0 10 > th dose independent rect. 19 1
61 282.49 temperature 20.0 90 < th dose dependent rect. 14 6
67 282.52 wind 7.0 10 > th dose dependent rect. 19 15
69 282.59 temperature 20.0 90 < th dose independent rect. 16 3
82 282.60 temperature 20.0 30 < th dose dependent rect. 9 11
90 282.66 temperature 20.0 90 < th dose independent rect. 8 12
113 282.87 humidity 90.0 10 < th dose independent rect. 5 1
125 283.28 temperature 20.0 10 > th dose independent rect. 5 1
127 283.36 radiation 40.0 10 > th dose independent rect. 12 1
128 283.40 atmosphere 1000.0 90 < th dose independent rect. 21 2
131 283.46 radiation 30.0 10 > th dose dependent rect. 12 1
135 283.50 atmosphere 1005.0 30 > th dose dependent rect. 12 11
136 283.52 temperature 25.0 30 > th dose dependent rect. 12 1
144 283.67 humidity 80.0 30 < th dose dependent rect. 12 1
178 283.87 temperature 10.0 1440 > th dose independent rect. 13 1
182 283.87 atmosphere 995.0 1440 > th dose independent rect. 13 1
186 283.87 temperature 10.0 1440 > th dose independent rect. 14 23
195 283.93 humidity 70.0 30 < th dose independent rect. 12 1
211 284.04 temperature 30.0 10 > th dose independent rect. 12 1
216 284.12 radiation 40.0 30 < th dose independent rect. 10 11
223 284.20 radiation 40.0 30 < th dose independent rect. 10 23
243 284.37 atmosphere 1005.0 30 > th dose independent rect. 12 1
246 284.40 atmosphere 1000.0 10 < th dose independent rect. 21 3
250 284.41 atmosphere 1000.0 30 > th dose dependent rect. 12 1
251 284.47 atmosphere 1000.0 10 < th dose independent rect. 21 1
259 284.47 atmosphere 1000.0 10 < th dose dependent rect. 21 1
277 284.51 wind 5.0 30 < th dose independent rect. 12 1
291 284.64 wind 3.0 30 > th dose independent rect. 12 1
296 284.72 temperature 20.0 30 > th dose independent rect. 12 1
297 284.72 wind 1.0 10 < th dose dependent rect. 4 5
299 284.73 temperature 10.0 30 > th dose independent rect. 12 1
302 284.73 atmosphere 1015.0 30 < th dose independent rect. 12 1
304 284.73 precipitation 0.1 30 < th dose independent rect. 12 1
306 284.73 temperature 10.0 30 > th dose independent rect. 13 23
307 284.73 precipitation 0.1 30 < th dose dependent rect. 12 1
315 284.82 wind 1.0 30 > th dose dependent rect. 12 1
316 284.82 wind 9.0 30 < th dose dependent rect. 12 1
340 285.08 wind 9.0 30 < th dose independent rect. 13 23
345 285.21 humidity 50.0 30 > th dose independent rect. 12 1
349 285.24 atmosphere 1005.0 270 > th dose dependent rect. 16 3
355 285.36 atmosphere 1015.0 30 < th dose dependent rect. 12 1
359 285.49 temperature 30.0 30 < th dose independent rect. 12 1
361 285.53 atmosphere 1005.0 30 > th dose dependent rect. 16 7
367 285.72 humidity 50.0 30 > th dose dependent rect. 12 1
369 285.84 radiation 40.0 30 < th dose independent rect. 6 23
371 285.90 atmosphere 1005.0 270 > th dose dependent rect. 15 5
373 285.99 wind 1.0 270 < th dose dependent rect. 18 4
376 286.03 wind 1.0 270 < th dose dependent rect. 20 2
377 286.04 radiation 40.0 30 > th dose independent rect. 9 4
449 286.47 radiation 40.0 10 < th dose independent rect. 24 16
450 286.48 radiation 10.0 90 < th dose independent rect. 23 13
466 286.72 temperature 10.0 30 > th dose dependent rect. 13 23
480 286.82 humidity 70.0 90 > th dose independent rect. 12 11
491 286.96 radiation 40.0 10 > th dose dependent rect. 12 22
495 287.07 wind 1.0 270 < th dose independent rect. 20 2
498 287.10 temperature 30.0 90 < th dose dependent rect. 16 7
500 287.11 humidity 70.0 90 > th dose independent rect. 16 7
503 287.15 radiation 40.0 10 < th dose independent rect. 23 23
509 287.24 radiation 40.0 10 > th dose independent rect. 12 22
528 287.30 radiation 30.0 30 > th dose dependent rect. 7 6
554 287.45 atmosphere 1005.0 30 > th dose dependent rect. 12 8
564 287.52 radiation 10.0 90 < th dose independent rect. 23 9
589 287.58 radiation 40.0 30 < th dose independent rect. 10 6
590 287.58 precipitation 0.1 30 < th dose independent rect. 13 23
591 287.58 precipitation 0.1 30 < th dose dependent rect. 13 23
592 287.61 atmosphere 1000.0 30 > th dose independent rect. 13 23
598 287.68 radiation 20.0 90 > th dose independent rect. 6 1
612 287.68 radiation 20.0 90 > th dose dependent rect. 6 1
634 287.73 radiation 40.0 10 > th dose independent sin 0 NA
636 287.73 radiation 40.0 30 < th dose independent rect. 10 19
638 287.73 wind 1.0 10 < th dose dependent rect. 4 14
643 287.74 radiation 40.0 10 > th dose independent no NA NA
828 287.77 wind 5.0 90 > th dose dependent rect. 18 2
837 287.79 wind 1.0 10 < th dose dependent rect. 4 12
869 287.86 wind 1.0 10 < th dose dependent rect. 4 10
884 287.92 temperature 20.0 30 > th dose independent rect. 10 11
902 287.99 wind 3.0 90 > th dose dependent rect. 7 2
904 288.01 wind 1.0 30 < th dose independent rect. 21 1
913 288.04 atmosphere 1010.0 30 < th dose dependent rect. 22 1