Os10g0398600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plant disease resistance response protein family protein.
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Os10g0398600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plant disease resistance response protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 199.68 | 0.664 | 6.36 | -2.75 | 0.45 | 0.367 | -0.444 | -8.54 | 0.416 | 10.2 | 26.9 | 208 | -- | -- |
| 201.34 | 0.661 | 6.26 | -1.78 | 0.409 | -0.714 | -0.563 | -- | 0.623 | 9.98 | 24.34 | 3788 | -- | -- |
| 200.34 | 0.659 | 6.37 | -2.76 | 0.452 | 0.412 | -- | -9.05 | 0.422 | 10.3 | 27.11 | 197 | -- | -- |
| 202.09 | 0.662 | 6.26 | -1.8 | 0.432 | -0.722 | -- | -- | 0.615 | 9.18 | 24.4 | 3835 | -- | -- |
| 212.32 | 0.679 | 6.4 | -2.93 | -- | 0.657 | -- | -11.6 | 0.407 | -- | 27.64 | 209 | -- | -- |
| 215.91 | 0.689 | 6.27 | -2.02 | 0.492 | -- | -0.496 | -- | 0.564 | 10.1 | -- | -- | -- | -- |
| 216.73 | 0.689 | 6.27 | -2.04 | 0.501 | -- | -- | -- | 0.562 | 9.67 | -- | -- | -- | -- |
| 212.25 | 0.679 | 6.26 | -1.83 | -- | -0.819 | -- | -- | 0.659 | -- | 24.1 | 763 | -- | -- |
| 262.2 | 0.754 | 6.17 | -- | 0.48 | -1.64 | -- | -- | 1.01 | 9.47 | 6.932 | 4400 | -- | -- |
| 231.63 | 0.711 | 6.28 | -2.04 | -- | -- | -- | -- | 0.562 | -- | -- | -- | -- | -- |
| 326.47 | 0.845 | 6.22 | -- | 0.507 | -- | -- | -- | 0.789 | 9.97 | -- | -- | -- | -- |
| 227.74 | 0.703 | 6.12 | -- | -- | -1.72 | -- | -- | 1.3 | -- | -5.048 | 47520 | -- | -- |
| 341.93 | 0.863 | 6.23 | -- | -- | -- | -- | -- | 0.789 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.68 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 3 | 189.15 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 26 | 191.21 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 9 |
| 29 | 191.45 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 9 |
| 51 | 192.23 | wind | 1 | 270 | < th | dose dependent | rect. | 22 | 1 |
| 108 | 193.58 | wind | 1 | 270 | < th | dose independent | rect. | 22 | 1 |
| 115 | 193.74 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 2 |
| 205 | 195.62 | temperature | 25 | 720 | < th | dose independent | sin | 11 | NA |
| 208 | 195.64 | wind | 9 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 223 | 195.79 | wind | 9 | 1440 | < th | dose independent | rect. | 3 | 7 |
| 225 | 195.79 | temperature | 30 | 270 | < th | dose independent | rect. | 22 | 23 |
| 234 | 195.96 | temperature | 25 | 1440 | > th | dose dependent | rect. | 23 | 8 |
| 260 | 196.25 | temperature | 30 | 270 | < th | dose independent | rect. | 10 | 23 |
| 272 | 196.45 | temperature | 25 | 4320 | > th | dose independent | sin | 11 | NA |
| 300 | 196.78 | temperature | 25 | 4320 | < th | dose independent | sin | 10 | NA |
| 306 | 196.82 | wind | 9 | 4320 | > th | dose dependent | rect. | 20 | 19 |
| 309 | 196.84 | wind | 7 | 4320 | > th | dose dependent | rect. | 7 | 3 |
| 328 | 197.01 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 15 |
| 374 | 197.41 | wind | 9 | 1440 | < th | dose independent | rect. | 9 | 1 |
| 378 | 197.46 | wind | 7 | 4320 | < th | dose independent | rect. | 7 | 3 |
| 379 | 197.46 | wind | 7 | 4320 | < th | dose independent | rect. | 5 | 5 |
| 391 | 197.51 | temperature | 25 | 270 | > th | dose independent | rect. | 13 | 18 |
| 404 | 197.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 413 | 197.65 | wind | 9 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 432 | 197.74 | wind | 9 | 4320 | > th | dose dependent | rect. | 1 | 14 |
| 437 | 197.75 | wind | 9 | 4320 | > th | dose dependent | rect. | 3 | 12 |
| 495 | 198.05 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 504 | 198.07 | wind | 9 | 4320 | > th | dose dependent | rect. | 9 | 6 |
| 544 | 198.26 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 559 | 198.38 | temperature | 25 | 720 | > th | dose independent | sin | 11 | NA |
| 575 | 198.44 | wind | 9 | 4320 | > th | dose independent | rect. | 20 | 19 |
| 665 | 198.81 | temperature | 10 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 680 | 198.86 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 19 |
| 686 | 198.90 | humidity | 80 | 4320 | < th | dose dependent | rect. | 23 | 3 |
| 690 | 198.91 | temperature | 25 | 90 | < th | dose independent | rect. | 19 | 12 |
| 713 | 199.01 | wind | 9 | 4320 | > th | dose dependent | sin | 6 | NA |
| 716 | 199.02 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 717 | 199.02 | wind | 1 | 30 | < th | dose dependent | rect. | 22 | 4 |
| 748 | 199.14 | wind | 9 | 4320 | > th | dose independent | rect. | 22 | 17 |
| 770 | 199.19 | temperature | 30 | 270 | > th | dose independent | rect. | 15 | 22 |
| 777 | 199.21 | wind | 9 | 4320 | < th | dose independent | rect. | 3 | 12 |
| 783 | 199.22 | temperature | 10 | 270 | > th | dose dependent | sin | 12 | NA |
| 794 | 199.25 | wind | 9 | 4320 | > th | dose independent | rect. | 1 | 14 |
| 795 | 199.25 | wind | 9 | 4320 | < th | dose independent | rect. | 1 | 14 |
| 803 | 199.26 | wind | 9 | 4320 | > th | dose independent | rect. | 3 | 12 |
| 832 | 199.33 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 851 | 199.38 | wind | 9 | 4320 | < th | dose independent | rect. | 23 | 16 |
| 863 | 199.41 | humidity | 80 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 957 | 199.59 | wind | 1 | 30 | < th | dose dependent | rect. | 17 | 9 |
| 963 | 199.60 | wind | 9 | 4320 | < th | dose independent | rect. | 7 | 8 |
| 964 | 199.60 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 14 |
| 973 | 199.61 | wind | 9 | 4320 | > th | dose independent | rect. | 9 | 6 |
| 983 | 199.63 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 21 |