BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0398600 Os10g0398600|J100067G03
         (164 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G42510.1  | chr5:16998268-16998816 REVERSE LENGTH=183           69   1e-12
AT1G22900.1  | chr1:8103910-8104491 REVERSE LENGTH=194             64   4e-11
AT5G42500.1  | chr5:16994359-16994916 REVERSE LENGTH=186           64   4e-11
AT2G21100.1  | chr2:9048687-9049336 REVERSE LENGTH=188             60   3e-10
AT1G65870.1  | chr1:24503624-24504193 FORWARD LENGTH=190           55   2e-08
AT3G13650.1  | chr3:4463056-4463616 FORWARD LENGTH=187             52   1e-07
AT1G58170.1  | chr1:21536188-21536745 FORWARD LENGTH=186           51   2e-07
AT1G55210.1  | chr1:20598057-20598620 REVERSE LENGTH=188           47   4e-06

>AT5G42510.1 | chr5:16998268-16998816 REVERSE LENGTH=183
          Length = 182

 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 37  RTTHLHFYMHEFFNG-GPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRA 95
           + THLHFY H+  +G  P       A P  +    FG + + DD L EG DP+S+ VGRA
Sbjct: 38  KFTHLHFYFHDVISGDKPTAVKVAEARPTTTLNVKFGVIMIADDPLTEGPDPSSKEVGRA 97

Query: 96  QGLAAGTSLADGSVTTMLDFVFT 118
           QG+ A T++ D   T + ++VFT
Sbjct: 98  QGMYASTAMKDIVFTMVFNYVFT 120



>AT1G22900.1 | chr1:8103910-8104491 REVERSE LENGTH=194
          Length = 193

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 37  RTTHLHFYMHEFFNG-GPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRA 95
           + THLHFY H+  +G  P       AP   S  ++FG V +VD  + EG + +S+ VGRA
Sbjct: 49  KLTHLHFYFHDIISGDKPTTIRVAEAPGTNSSATVFGAVLIVDAPVTEGPELSSKEVGRA 108

Query: 96  QGLAAGTSLADGSVTTMLDFVFTD 119
           QGL A T +     T + +FVFT+
Sbjct: 109 QGLYASTDMKTFGFTMVFNFVFTE 132



>AT5G42500.1 | chr5:16994359-16994916 REVERSE LENGTH=186
          Length = 185

 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 50/84 (59%), Gaps = 3/84 (3%)

Query: 37  RTTHLHFYMHEFFNGGPNGSMARVAPPARSGGSL--FGFVSVVDDALREGADPASRLVGR 94
           + THLHFY H+  +G    +  +VA   R+  S   FG + + DD L EG DP+S+ VGR
Sbjct: 41  KFTHLHFYFHDVISGD-KPTAVKVAEARRTNSSNVNFGVIMIADDPLTEGPDPSSKEVGR 99

Query: 95  AQGLAAGTSLADGSVTTMLDFVFT 118
           AQG+ A T++ + S T + +  FT
Sbjct: 100 AQGMYALTAMKNISFTMVFNLAFT 123



>AT2G21100.1 | chr2:9048687-9049336 REVERSE LENGTH=188
          Length = 187

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/85 (40%), Positives = 47/85 (55%), Gaps = 3/85 (3%)

Query: 37  RTTHLHFYMHEFFNGGPNGSMARVAP--PARSGGSLFGFVSVVDDALREGADPASRLVGR 94
           + T+L FY H+  +G  N +  +VA         +LFG V +VDDAL E ADP S+LVGR
Sbjct: 41  KVTNLQFYFHDTLSG-KNPTAVKVAQGTDTEKSPTLFGAVFMVDDALTETADPKSKLVGR 99

Query: 95  AQGLAAGTSLADGSVTTMLDFVFTD 119
           AQGL   +   +  +   + F F D
Sbjct: 100 AQGLYGSSCKEEVGLIMAMSFCFED 124



>AT1G65870.1 | chr1:24503624-24504193 FORWARD LENGTH=190
          Length = 189

 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 37  RTTHLHFYMHEFFNG-GPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRA 95
           + THLHFY H+  +G  P        P   S  + FG V+VVDD L  G +  S  VGRA
Sbjct: 43  KLTHLHFYFHDIVSGDKPTSVQVANGPTTNSSATGFGLVAVVDDKLTVGPEITSEEVGRA 102

Query: 96  QGLAAGTSLADGSVTTMLDFVFT 118
           QG+ A        +    + VFT
Sbjct: 103 QGMYASADQNKLGLLMAFNLVFT 125



>AT3G13650.1 | chr3:4463056-4463616 FORWARD LENGTH=187
          Length = 186

 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 37  RTTHLHFYMHEFFNGGPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRAQ 96
           + TH   Y H+  +G  N S   + PP  S  S FG V+V+D+ L       S LVG+AQ
Sbjct: 42  KLTHFRVYWHDILSGS-NPSSVVINPPI-SNSSFFGSVTVIDNRLTTEVAVNSTLVGQAQ 99

Query: 97  GLAAGTSLADGSVTTMLDFVF 117
           G+ A T   D S   +++F F
Sbjct: 100 GIYAATGQRDASALMVMNFAF 120



>AT1G58170.1 | chr1:21536188-21536745 FORWARD LENGTH=186
          Length = 185

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)

Query: 37  RTTHLHFYMHEFFNGGPNGSMARVAPPAR-SGGSLFGFVSVVDDALREGADPASRLVGRA 95
           + TH   Y H+   G  + S++ + PP + +G + FG + ++D+ L      +S++VGRA
Sbjct: 38  KLTHFRVYWHDIVTGQDSSSVSIMNPPKKYTGATGFGLMRMIDNPLTLTPKLSSKMVGRA 97

Query: 96  QGLAAGTSLADGSVTTMLDFVFTD 119
           QG  AGTS  +  +   ++F   D
Sbjct: 98  QGFYAGTSKEEIGLLMAMNFAILD 121



>AT1G55210.1 | chr1:20598057-20598620 REVERSE LENGTH=188
          Length = 187

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)

Query: 37  RTTHLHFYMHEFFNGGPNGSMARVAPPARSGGSLFGFVSVVDDALREGADPASRLVGRAQ 96
           + TH   Y H+  +G PN +   + PP  +  S FG +S++D+AL       S ++G+AQ
Sbjct: 43  KLTHFKVYWHDILSG-PNPTSIMIQPPV-TNSSYFGAISMIDNALTAKVPMNSTVLGQAQ 100

Query: 97  GLAAGTSLADGSVTTMLDFVF 117
           G  AG +  +      ++F F
Sbjct: 101 GFYAGAAQKELGFLMAMNFAF 121



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,137,937
Number of extensions: 71017
Number of successful extensions: 172
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 169
Number of HSP's successfully gapped: 9
Length of query: 164
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 73
Effective length of database: 8,611,713
Effective search space: 628655049
Effective search space used: 628655049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)