Os10g0390600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2).
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Os10g0390600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Alanine aminotransferase 2 (EC 2.6.1.2) (GPT) (Glutamic--pyruvic transaminase 2) (Glutamic--alanine transaminase 2) (ALAAT-2).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 146.81 | 0.569 | 8.89 | -2.07 | 1.91 | 0.721 | 1.03 | 6.2 | 0.454 | 5.48 | 1.76 | 4258 | -- | -- |
| 157.66 | 0.585 | 8.71 | -1.16 | 1.79 | 0.677 | -0.715 | -- | 0.795 | 5.94 | 67.53 | 21609 | -- | -- |
| 149.39 | 0.569 | 8.89 | -2.05 | 1.92 | 0.716 | -- | 6.23 | 0.453 | 5.48 | 1.746 | 4247 | -- | -- |
| 136.87 | 0.545 | 8.67 | -0.946 | 1.91 | 1.22 | -- | -- | 1.1 | 5.7 | 56.39 | 21809 | -- | -- |
| 208.96 | 0.673 | 8.81 | -1.32 | -- | 2.78 | -- | 6.38 | 0.852 | -- | 3.334 | 5020 | -- | -- |
| 188.45 | 0.644 | 8.75 | -0.771 | 1.89 | -- | 1.04 | -- | 0.672 | 5.73 | -- | -- | -- | -- |
| 191.1 | 0.647 | 8.76 | -0.765 | 1.89 | -- | -- | -- | 0.668 | 5.7 | -- | -- | -- | -- |
| 176.86 | 0.619 | 8.8 | -0.415 | -- | 2.72 | -- | -- | 0.831 | -- | 10.78 | 733 | -- | -- |
| 155.41 | 0.581 | 8.64 | -- | 1.86 | 1.17 | -- | -- | 1.22 | 5.79 | 16.06 | 21822 | -- | -- |
| 376.83 | 0.907 | 8.79 | -0.705 | -- | -- | -- | -- | 0.713 | -- | -- | -- | -- | -- |
| 206.53 | 0.672 | 8.74 | -- | 1.88 | -- | -- | -- | 0.753 | 5.72 | -- | -- | -- | -- |
| 183.59 | 0.631 | 8.74 | -- | -- | 2.42 | -- | -- | 0.931 | -- | 15.17 | 711 | -- | -- |
| 389.95 | 0.922 | 8.77 | -- | -- | -- | -- | -- | 0.791 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 126.30 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 2 | 126.81 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 3 | 126.84 | temperature | 25 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 5 | 127.58 | temperature | 25 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 6 | 128.03 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 9 | 128.28 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 12 | 128.62 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 17 | 129.25 | temperature | 25 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 19 | 129.38 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 2 |
| 25 | 129.58 | temperature | 20 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 67 | 130.10 | temperature | 25 | 43200 | < th | dose independent | rect. | 3 | 11 |
| 112 | 130.35 | temperature | 25 | 43200 | > th | dose independent | sin | 3 | NA |
| 139 | 130.48 | temperature | 25 | 43200 | < th | dose independent | sin | 3 | NA |
| 230 | 130.98 | temperature | 20 | 43200 | > th | dose dependent | sin | 5 | NA |
| 345 | 131.36 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 360 | 131.39 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 20 |
| 377 | 131.43 | temperature | 25 | 43200 | > th | dose independent | rect. | 6 | 16 |
| 381 | 131.44 | temperature | 25 | 43200 | > th | dose independent | rect. | 8 | 15 |
| 384 | 131.44 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 20 |
| 428 | 131.50 | temperature | 25 | 43200 | < th | dose independent | rect. | 6 | 16 |
| 432 | 131.51 | temperature | 25 | 43200 | < th | dose independent | rect. | 8 | 15 |
| 628 | 131.77 | temperature | 25 | 43200 | > th | dose independent | no | NA | NA |
| 654 | 131.82 | temperature | 25 | 43200 | < th | dose independent | no | NA | NA |
| 670 | 131.86 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 815 | 132.14 | temperature | 20 | 43200 | > th | dose dependent | no | NA | NA |
| 843 | 132.17 | temperature | 20 | 43200 | > th | dose dependent | rect. | 4 | 23 |
| 844 | 132.17 | temperature | 20 | 43200 | > th | dose dependent | rect. | 6 | 23 |