Os10g0390100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os10g0390100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.33 | 0.32 | 6.52 | 0.801 | 0.513 | -0.933 | 0.345 | 2.58 | 0.395 | 15.4 | 23.86 | 1242 | -- | -- |
| 50.08 | 0.33 | 6.62 | 0.092 | 0.539 | -0.642 | 0.14 | -- | 0.111 | 15.5 | 26.39 | 2624 | -- | -- |
| 46.67 | 0.318 | 6.52 | 0.769 | 0.517 | -0.91 | -- | 2.38 | 0.398 | 15.3 | 23.56 | 1246 | -- | -- |
| 50.08 | 0.33 | 6.62 | 0.085 | 0.553 | -0.624 | -- | -- | 0.105 | 15.2 | 26.4 | 2645 | -- | -- |
| 60.51 | 0.362 | 6.51 | 0.814 | -- | -1.1 | -- | 2.64 | 0.396 | -- | 23.98 | 1182 | -- | -- |
| 65.25 | 0.379 | 6.62 | -0.119 | 0.632 | -- | 0.244 | -- | 0.0916 | 15 | -- | -- | -- | -- |
| 65.45 | 0.379 | 6.62 | -0.114 | 0.633 | -- | -- | -- | 0.093 | 14.9 | -- | -- | -- | -- |
| 66.12 | 0.379 | 6.54 | 0.237 | -- | -0.918 | -- | -- | 0.388 | -- | 22.7 | 1174 | -- | -- |
| 50.26 | 0.33 | 6.62 | -- | 0.558 | -0.605 | -- | -- | 0.1 | 15.2 | 26.41 | 2642 | -- | -- |
| 88.52 | 0.44 | 6.63 | -0.141 | -- | -- | -- | -- | 0.0767 | -- | -- | -- | -- | -- |
| 65.79 | 0.379 | 6.62 | -- | 0.635 | -- | -- | -- | 0.106 | 14.9 | -- | -- | -- | -- |
| 63.84 | 0.372 | 6.61 | -- | -- | -0.814 | -- | -- | 0.163 | -- | 24.8 | 1186 | -- | -- |
| 89.05 | 0.44 | 6.62 | -- | -- | -- | -- | -- | 0.0923 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.27 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 1 |
| 5 | 46.41 | temperature | 10 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 51 | 47.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 55 | 47.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 71 | 47.15 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 6 |
| 76 | 47.17 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 99 | 47.22 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 108 | 47.23 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 128 | 47.29 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 160 | 47.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 304 | 47.53 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 312 | 47.53 | temperature | 25 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 349 | 47.63 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 4 |
| 367 | 47.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 17 | 15 |
| 381 | 47.68 | temperature | 10 | 1440 | > th | dose dependent | sin | 23 | NA |
| 385 | 47.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 23 |
| 395 | 47.70 | humidity | 80 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 433 | 47.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 459 | 47.85 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 8 |
| 472 | 47.87 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 10 |
| 482 | 47.88 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 487 | 47.89 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 3 |
| 500 | 47.92 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 510 | 47.93 | temperature | 10 | 270 | > th | dose dependent | rect. | 24 | 22 |
| 539 | 48.00 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 23 |
| 553 | 48.05 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 3 |
| 581 | 48.08 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 16 |
| 681 | 48.24 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 742 | 48.33 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 23 |
| 750 | 48.35 | humidity | 80 | 43200 | < th | dose independent | rect. | 22 | 2 |
| 753 | 48.35 | humidity | 80 | 43200 | > th | dose independent | rect. | 22 | 8 |
| 791 | 48.40 | humidity | 80 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 927 | 48.62 | temperature | 30 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 945 | 48.65 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 975 | 48.70 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 9 |
| 985 | 48.72 | temperature | 10 | 720 | > th | dose dependent | no | NA | NA |
| 986 | 48.72 | humidity | 80 | 43200 | < th | dose dependent | rect. | 22 | 1 |
| 991 | 48.72 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 20 |