BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0390100 Os10g0390100|AK067341
         (839 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G72320.1  | chr1:27228984-27232580 REVERSE LENGTH=754          523   e-148

>AT1G72320.1 | chr1:27228984-27232580 REVERSE LENGTH=754
          Length = 753

 Score =  523 bits (1346), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/571 (46%), Positives = 378/571 (66%), Gaps = 5/571 (0%)

Query: 108 FLRKRVDPETAKYFLEISYLFDNKEIDLEERATICANALEETKGKELELATDGPISHTLQ 167
           F+RK +DPET+KYF EI+ LFD+ E++LEER+ IC NALEET+G+E E+ATD  ISH LQ
Sbjct: 83  FVRKEIDPETSKYFSEIANLFDSNEVELEERSVICGNALEETRGREYEIATDYIISHVLQ 142

Query: 168 VLVEGCELEQLCVFLHNSIESFHIIAVDKFGSHVAEAALKSLATHLEDEASRGIIEDILI 227
            L+EGCEL+QLC F+ NS   F  IA+D+ GSHVAE+ALKSLATHLE+  +  +IE+ L 
Sbjct: 143 TLLEGCELDQLCSFIRNSASVFPAIAMDRSGSHVAESALKSLATHLENPDAYSVIEEALH 202

Query: 228 RICKVIAGDAANVMSSCYGSHVLRTLLCLCKGVPLQSLQDFHTTKRSAVLAERLSCGSTR 287
            ICKVI  +  ++M +CYGSHVLR LLCLCKGV L S  + +  K S  LA+RL+   ++
Sbjct: 203 SICKVIVDNPLDMMCNCYGSHVLRRLLCLCKGVSLDS-PELYGAKSSKALAKRLNLKMSQ 261

Query: 288 SGGSDPKNQGCGFSDIFKSFVREMLQNAKDDIASLETDKNSSLVLQTALKLSAGDDHELN 347
              ++ +    GF  +    +  +L  +++D+  L+ D+ SSLVLQTAL+L    D +L 
Sbjct: 262 LDDNNLEIPHQGFPGMLTYLLSGLLSCSREDMKYLQVDQYSSLVLQTALRLMLKQDEQLL 321

Query: 348 YIISILLGFDEDDTAQKKDRSEQK--NEIIALLEDTAYSHLLEVIVEVAPEELRNNMLTG 405
            II ++L  +  +   +    E     EI+  ++D ++SHL+EVI+EVAPE L N M   
Sbjct: 322 EIIPLILRCNSTNKKVEGFHIETNVAKEILESMKDNSFSHLVEVILEVAPESLYNEMFNK 381

Query: 406 TLKGALFAISSHHCGNYVVQALVASAKTSDQMEQIWDELGSRINELLELGKAGVVASILA 465
             K +LF +S   C N+V+QAL++ A+  +QM  +W+EL  R  +LLE GK+GVVAS++A
Sbjct: 382 VFKNSLFELSVDRCANFVIQALISHARDQEQMGIMWEELAPRFKDLLEQGKSGVVASLIA 441

Query: 466 ACQRLETKRLESSQVXXXXXXXXXXXXXXIVAHMLFLENYL--HQKSSWEWPLGAKMSVL 523
             QRL++   +  +               I+  +LFL+ Y     KS+WEW  GAKM V+
Sbjct: 442 VSQRLQSHENKCCEALVGAVCSTNESRISILPRLLFLDYYFGCRDKSTWEWAPGAKMHVM 501

Query: 524 GCLMLQSILQYPHQYIRPYVASLLAMDDNKILQISKDSGGSRVLEAFLCSSATAKRKFKV 583
           GCL+LQ I ++   +I+PY+ SL +M    I + +KDS G+RV+EAFL S A  K+K ++
Sbjct: 502 GCLILQGIFKFSSDHIQPYITSLTSMKAEYITETAKDSSGARVIEAFLASDAATKQKRRL 561

Query: 584 FAKLQGHYGEIAMNPSGSFLVEKCFTASNFSHKEAIVVELLAVQTELSRTRHGFHLLKKL 643
             KL+GH+GE++++ SGSF VEKCF A N + +EAI  ELL V+ +LS+T+ G +LL+KL
Sbjct: 562 IIKLRGHFGELSLHTSGSFTVEKCFDACNLTLREAIASELLDVKVDLSKTKQGPYLLRKL 621

Query: 644 DVDRYSRRPDQWRASQTSKETTQREFQVEFG 674
           D+D Y+ RPDQW++ Q +K++T  EF   FG
Sbjct: 622 DIDGYASRPDQWKSRQEAKQSTYNEFCSAFG 652



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.129    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 17,061,603
Number of extensions: 698896
Number of successful extensions: 2314
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2321
Number of HSP's successfully gapped: 1
Length of query: 839
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 732
Effective length of database: 8,173,057
Effective search space: 5982677724
Effective search space used: 5982677724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 116 (49.3 bits)