Os10g0388900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os10g0388900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.95 | 0.423 | 8.29 | 0.0473 | 0.458 | -1.21 | 1.58 | 5.1 | -0.228 | 22.7 | 26.5 | 5871 | -- | -- |
| 87.81 | 0.436 | 8.41 | -0.645 | 0.503 | -1.23 | 1.45 | -- | -0.33 | 22.4 | 21.79 | 18661 | -- | -- |
| 89.77 | 0.441 | 8.29 | 0.0405 | 0.481 | -1.2 | -- | 5.28 | -0.235 | 21.5 | 26.7 | 5872 | -- | -- |
| 95.13 | 0.454 | 8.42 | -0.559 | 0.521 | -1.32 | -- | -- | -0.353 | 21.9 | 21.2 | 21031 | -- | -- |
| 103.05 | 0.473 | 8.27 | 0.0417 | -- | -1.19 | -- | 5.33 | -0.238 | -- | 26.7 | 5851 | -- | -- |
| 121.2 | 0.516 | 8.53 | -1.79 | 0.449 | -- | 1.49 | -- | -0.84 | 22.7 | -- | -- | -- | -- |
| 129.57 | 0.533 | 8.53 | -1.84 | 0.466 | -- | -- | -- | -0.841 | 21.7 | -- | -- | -- | -- |
| 109.3 | 0.487 | 8.4 | -0.447 | -- | -1.42 | -- | -- | -0.286 | -- | 21.2 | 21494 | -- | -- |
| 97.68 | 0.46 | 8.41 | -- | 0.568 | -1.54 | -- | -- | -0.21 | 21.6 | 21.1 | 25457 | -- | -- |
| 142.45 | 0.558 | 8.52 | -1.84 | -- | -- | -- | -- | -0.842 | -- | -- | -- | -- | -- |
| 219.16 | 0.693 | 8.49 | -- | 0.464 | -- | -- | -- | -0.636 | 21.4 | -- | -- | -- | -- |
| 108.73 | 0.486 | 8.37 | -- | -- | -1.74 | -- | -- | -0.137 | -- | 19.6 | 28656 | -- | -- |
| 231.73 | 0.711 | 8.47 | -- | -- | -- | -- | -- | -0.638 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 71.57 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 2 | 72.20 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 7 |
| 18 | 76.59 | radiation | 40 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 19 | 76.69 | radiation | 40 | 43200 | < th | dose independent | rect. | 22 | 10 |
| 20 | 76.70 | radiation | 40 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 24 | 76.77 | radiation | 40 | 43200 | < th | dose independent | rect. | 5 | 3 |
| 25 | 76.79 | radiation | 1 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 26 | 76.79 | radiation | 40 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 28 | 76.79 | radiation | 1 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 33 | 76.82 | radiation | 30 | 43200 | > th | dose dependent | rect. | 16 | 16 |
| 35 | 76.83 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 1 |
| 53 | 76.87 | radiation | 1 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 56 | 77.18 | temperature | 15 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 57 | 77.21 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 70 | 77.65 | temperature | 15 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 77 | 77.85 | temperature | 15 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 85 | 78.03 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 90 | 78.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 10 |
| 91 | 78.05 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 13 |
| 100 | 78.08 | radiation | 40 | 43200 | < th | dose independent | rect. | 15 | 8 |
| 116 | 78.25 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 1 |
| 134 | 78.31 | temperature | 15 | 43200 | > th | dose independent | rect. | 11 | 1 |
| 171 | 78.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 174 | 78.59 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 189 | 78.73 | radiation | 1 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 190 | 78.74 | radiation | 1 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 191 | 78.77 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 192 | 78.78 | temperature | 15 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 206 | 78.90 | radiation | 10 | 43200 | < th | dose independent | rect. | 18 | 14 |
| 210 | 78.92 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 10 |
| 221 | 78.96 | radiation | 10 | 43200 | < th | dose independent | sin | 12 | NA |
| 237 | 79.01 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 253 | 79.05 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 7 |
| 254 | 79.05 | radiation | 10 | 43200 | < th | dose independent | rect. | 16 | 9 |
| 262 | 79.06 | humidity | 90 | 43200 | > th | dose dependent | sin | 9 | NA |
| 268 | 79.07 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 19 |
| 278 | 79.10 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 16 |
| 288 | 79.12 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 466 | 79.43 | humidity | 80 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 481 | 79.46 | temperature | 15 | 43200 | < th | dose dependent | sin | 11 | NA |
| 493 | 79.49 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 3 |
| 505 | 79.51 | humidity | 90 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 515 | 79.54 | humidity | 90 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 614 | 79.67 | humidity | 90 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 634 | 79.70 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |
| 638 | 79.70 | radiation | 1 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 645 | 79.72 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 5 |
| 806 | 79.91 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 861 | 80.00 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 1 |
| 870 | 80.03 | temperature | 15 | 43200 | > th | dose independent | rect. | 10 | 18 |
| 890 | 80.07 | temperature | 15 | 43200 | > th | dose independent | rect. | 21 | 16 |
| 920 | 80.12 | temperature | 15 | 43200 | < th | dose independent | rect. | 21 | 15 |
| 927 | 80.13 | humidity | 80 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 940 | 80.15 | radiation | 40 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 942 | 80.16 | temperature | 15 | 43200 | > th | dose independent | sin | 12 | NA |
| 954 | 80.18 | humidity | 90 | 43200 | > th | dose independent | sin | 15 | NA |