BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0388900 Os10g0388900|AK101651
         (221 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37020.2  | chr4:17445778-17447178 FORWARD LENGTH=259          218   1e-57
AT3G19760.1  | chr3:6863790-6866242 FORWARD LENGTH=409             58   4e-09

>AT4G37020.2 | chr4:17445778-17447178 FORWARD LENGTH=259
          Length = 258

 Score =  218 bits (556), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 115/188 (61%), Positives = 142/188 (75%), Gaps = 2/188 (1%)

Query: 31  HFYLAVDRLQFKMRTLLELLGVVADRRGALPIAVGVSSRDELDLVCADVASLPFVSLSPL 90
           HFYLAVDR QFKM T++ELLGV+  RR  LPI V  SSRDELD VC+ +++LP++SL+ L
Sbjct: 22  HFYLAVDRPQFKMETVVELLGVLG-RRPWLPIVVCCSSRDELDAVCSSLSTLPYISLAAL 80

Query: 91  YSDQAESERASVLDKFRQATIQWNHTKAAAADIADSPKTESADSKLT-IVVATDACLPQA 149
           YSD A+ ERA V++KFRQATI WN    +  +          + K + +VV TD CLP  
Sbjct: 81  YSDLADRERAMVIEKFRQATINWNQQLNSVVEEGLEESENGKEEKTSHLVVVTDVCLPLL 140

Query: 150 TLGEAPLMARVLINYELPTKKEAYFRRMSTCLAADGIVINMVVGGEVATLKALEETSGLL 209
           + GE+ L ARVLINYELPTKKE Y RR++TCLA+ GIVINMVVGGEV TLK+LEE+SG+L
Sbjct: 141 SSGESSLSARVLINYELPTKKETYTRRITTCLASGGIVINMVVGGEVTTLKSLEESSGIL 200

Query: 210 IAEMPIHV 217
           IAEMPI+V
Sbjct: 201 IAEMPINV 208



>AT3G19760.1 | chr3:6863790-6866242 FORWARD LENGTH=409
          Length = 408

 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/194 (21%), Positives = 92/194 (47%), Gaps = 36/194 (18%)

Query: 30  RHFYLAVDRLQFKMRTLLELLGVVADRRGALPIAVGVSSRDELDLVCADVASLPFVSLSP 89
           + F++AV++ ++K  TL +L   +   +      +  +++ ++D +   + S  F ++S 
Sbjct: 249 KQFFVAVEKEEWKFDTLCDLYDTLTITQAV----IFCNTKRKVDYLSEKMRSHNF-TVSS 303

Query: 90  LYSDQAESERASVLDKFRQATIQWNHTKAAAADIADSPKTESADSKLTIVVATDACLPQA 149
           ++ D  + ER +++++FR                       S DS+  +++ TD      
Sbjct: 304 MHGDMPQKERDAIMNEFR-----------------------SGDSR--VLITTDVWARGI 338

Query: 150 TLGEAPLMARVLINYELPTKKEAYFRRM--STCLAADGIVINMVVGGEVATLKALEETSG 207
            + +  L    +INY+LP  +E Y  R+  S      G+ IN V   ++  L+ +E+   
Sbjct: 339 DVQQVSL----VINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYS 394

Query: 208 LLIAEMPIHVSEIL 221
             I EMP++V++++
Sbjct: 395 TQIDEMPMNVADLI 408



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,742,996
Number of extensions: 130074
Number of successful extensions: 326
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 2
Length of query: 221
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 126
Effective length of database: 8,502,049
Effective search space: 1071258174
Effective search space used: 1071258174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)