Os10g0382300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Signal peptide containing large protein with proline stretches.
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Os10g0382300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Signal peptide containing large protein with proline stretches.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 52.09 | 0.339 | 8.42 | -0.0394 | 0.554 | 0.202 | 0.0903 | 5.39 | -0.107 | 7.25 | 30.6 | 553 | -- | -- |
| 52.8 | 0.338 | 8.47 | -0.429 | 0.552 | 0.775 | 0.0598 | -- | -0.0976 | 7.08 | 30.5 | 550 | -- | -- |
| 52.11 | 0.336 | 8.42 | -0.0412 | 0.553 | 0.201 | -- | 5.33 | -0.108 | 7.23 | 30.6 | 552 | -- | -- |
| 52.72 | 0.338 | 8.47 | -0.449 | 0.558 | 0.781 | -- | -- | -0.112 | 7.16 | 30.4 | 538 | -- | -- |
| 65.25 | 0.376 | 8.44 | 0.0328 | -- | -0.191 | -- | 5.73 | -0.13 | -- | 30.72 | 552 | -- | -- |
| 63.79 | 0.374 | 8.49 | -0.335 | 0.338 | -- | -0.417 | -- | -0.172 | 7.36 | -- | -- | -- | -- |
| 64.18 | 0.375 | 8.49 | -0.343 | 0.337 | -- | -- | -- | -0.17 | 7.77 | -- | -- | -- | -- |
| 63.54 | 0.371 | 8.48 | -0.35 | -- | 0.494 | -- | -- | -0.0693 | -- | 32.1 | 4571 | -- | -- |
| 57.73 | 0.354 | 8.46 | -- | 0.555 | 0.748 | -- | -- | -0.0605 | 7.24 | 30.6 | 552 | -- | -- |
| 70.33 | 0.392 | 8.5 | -0.339 | -- | -- | -- | -- | -0.165 | -- | -- | -- | -- | -- |
| 67.29 | 0.384 | 8.48 | -- | 0.335 | -- | -- | -- | -0.132 | 7.84 | -- | -- | -- | -- |
| 67.39 | 0.382 | 8.48 | -- | -- | 0.331 | -- | -- | -0.0752 | -- | 32 | 5781 | -- | -- |
| 73.36 | 0.4 | 8.49 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.10 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 19 |
| 2 | 52.13 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 4 | 52.35 | temperature | 30 | 720 | > th | dose independent | rect. | 8 | 6 |
| 18 | 52.35 | temperature | 30 | 720 | > th | dose dependent | rect. | 8 | 7 |
| 53 | 52.49 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 3 |
| 54 | 52.49 | temperature | 30 | 720 | > th | dose dependent | sin | 5 | NA |
| 78 | 52.64 | temperature | 30 | 720 | > th | dose independent | sin | 5 | NA |
| 151 | 52.97 | temperature | 30 | 720 | < th | dose independent | rect. | 22 | 14 |
| 188 | 53.14 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 6 |
| 190 | 53.17 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 13 |
| 191 | 53.17 | temperature | 25 | 270 | > th | dose dependent | sin | 13 | NA |
| 195 | 53.21 | temperature | 30 | 720 | < th | dose independent | rect. | 24 | 17 |
| 196 | 53.23 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 16 |
| 198 | 53.24 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 13 |
| 221 | 53.34 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 222 | 53.34 | temperature | 30 | 270 | < th | dose independent | rect. | 8 | 10 |
| 231 | 53.37 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 4 |
| 276 | 53.48 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 7 |
| 288 | 53.59 | temperature | 25 | 10 | > th | dose dependent | sin | 11 | NA |
| 290 | 53.62 | temperature | 30 | 720 | < th | dose independent | sin | 22 | NA |
| 294 | 53.63 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 12 |
| 298 | 53.64 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 22 |
| 301 | 53.65 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |
| 414 | 53.68 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 11 |
| 415 | 53.68 | temperature | 25 | 90 | > th | dose dependent | rect. | 16 | 12 |
| 417 | 53.69 | temperature | 25 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 422 | 53.71 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 1 |
| 423 | 53.71 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 4 |
| 462 | 53.79 | temperature | 30 | 270 | < th | dose independent | sin | 20 | NA |
| 475 | 53.85 | temperature | 30 | 270 | > th | dose independent | sin | 19 | NA |
| 484 | 53.87 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 23 |
| 494 | 53.91 | temperature | 30 | 270 | < th | dose independent | sin | 17 | NA |
| 503 | 53.94 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 525 | 53.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 16 |
| 532 | 53.98 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 23 |
| 599 | 54.09 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 695 | 54.10 | temperature | 30 | 720 | < th | dose independent | sin | 5 | NA |
| 733 | 54.12 | temperature | 25 | 720 | > th | dose dependent | rect. | 24 | 9 |
| 754 | 54.17 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 755 | 54.17 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 11 |
| 766 | 54.18 | temperature | 30 | 720 | < th | dose independent | rect. | 20 | 16 |
| 776 | 54.19 | temperature | 30 | 270 | < th | dose independent | rect. | 14 | 23 |
| 803 | 54.22 | temperature | 30 | 720 | < th | dose independent | sin | 2 | NA |
| 921 | 54.25 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 18 |
| 926 | 54.26 | temperature | 30 | 270 | < th | dose independent | rect. | 19 | 23 |
| 952 | 54.33 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 970 | 54.37 | temperature | 30 | 720 | < th | dose independent | rect. | 15 | 21 |