Os10g0378300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Truncated copper-binding protein CUTA.
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Os10g0378300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Truncated copper-binding protein CUTA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 35.53 | 0.28 | 11.1 | 0.0114 | 0.692 | -1.62 | -0.597 | -0.367 | -0.17 | 20.6 | 30.17 | 98 | -- | -- |
| 35.68 | 0.278 | 11.1 | -0.0505 | 0.694 | -1.63 | -0.62 | -- | -0.187 | 20.6 | 30.27 | 101 | -- | -- |
| 36.66 | 0.282 | 11.1 | 0.0254 | 0.696 | -1.63 | -- | -0.446 | -0.168 | 20.6 | 30 | 98 | -- | -- |
| 36.95 | 0.283 | 11.1 | -0.0293 | 0.691 | -1.61 | -- | -- | -0.185 | 20.5 | 30.15 | 103 | -- | -- |
| 53.29 | 0.34 | 11.1 | -0.18 | -- | -2.04 | -- | 0.63 | -0.204 | -- | 55.76 | 361 | -- | -- |
| 70.27 | 0.393 | 11.1 | 0.365 | 0.927 | -- | -0.0397 | -- | 0.124 | 18.2 | -- | -- | -- | -- |
| 70.27 | 0.393 | 11.1 | 0.366 | 0.927 | -- | -- | -- | 0.124 | 18.2 | -- | -- | -- | -- |
| 53.51 | 0.341 | 11.1 | -0.0785 | -- | -2.02 | -- | -- | -0.175 | -- | 48.28 | 340 | -- | -- |
| 36.95 | 0.283 | 11.1 | -- | 0.689 | -1.59 | -- | -- | -0.179 | 20.4 | 30.12 | 104 | -- | -- |
| 114.81 | 0.501 | 11 | 0.341 | -- | -- | -- | -- | 0.103 | -- | -- | -- | -- | -- |
| 73.8 | 0.402 | 11.1 | -- | 0.921 | -- | -- | -- | 0.0829 | 18.2 | -- | -- | -- | -- |
| 53.66 | 0.341 | 11.1 | -- | -- | -2 | -- | -- | -0.163 | -- | 65.44 | 336 | -- | -- |
| 117.87 | 0.507 | 11 | -- | -- | -- | -- | -- | 0.0655 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.36 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 21 |
| 6 | 34.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 20 |
| 9 | 35.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 10 | 35.57 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 16 | 35.88 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 17 | 35.97 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 22 | 36.10 | temperature | 30 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 23 | 36.13 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 35 | 36.58 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 45 | 36.78 | temperature | 10 | 90 | > th | dose dependent | no | NA | NA |
| 49 | 36.89 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 50 | 36.92 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 64 | 37.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 16 |
| 80 | 37.28 | temperature | 15 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 144 | 38.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 255 | 39.56 | temperature | 20 | 90 | > th | dose dependent | rect. | 22 | 23 |
| 271 | 39.83 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 279 | 40.02 | temperature | 15 | 720 | > th | dose dependent | rect. | 3 | 17 |
| 281 | 40.04 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 18 |
| 320 | 40.27 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 18 |
| 364 | 40.59 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 15 |
| 370 | 40.64 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 462 | 41.11 | temperature | 30 | 720 | < th | dose dependent | sin | 0 | NA |
| 569 | 41.51 | temperature | 15 | 720 | > th | dose dependent | sin | 23 | NA |
| 769 | 42.14 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 19 |
| 774 | 42.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 898 | 42.47 | temperature | 20 | 30 | > th | dose dependent | sin | 22 | NA |