BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0378300 Os10g0378300|AK059907
         (175 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33740.2  | chr2:14269590-14271523 FORWARD LENGTH=183          184   1e-47

>AT2G33740.2 | chr2:14269590-14271523 FORWARD LENGTH=183
          Length = 182

 Score =  184 bits (468), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 89/104 (85%), Positives = 97/104 (93%)

Query: 70  VPSIVVYVTVPNKEAGKRLAGSIISEKLAACVNIVPGIESVYWWEGKVQTDAEELLIIKT 129
           VPSIVVYVTVPN+EAGK+LA SI+ EKLAACVNIVPGIESVY WEGKVQ+D+EELLIIKT
Sbjct: 78  VPSIVVYVTVPNREAGKKLANSIVQEKLAACVNIVPGIESVYEWEGKVQSDSEELLIIKT 137

Query: 130 RESLLDALTEHVKANHEYDVPEVIALPIKGGNLKYLEWLKNSTR 173
           R+SLL+ LTEHV ANHEYDVPEVIALPI GG+ KYLEWLKNSTR
Sbjct: 138 RQSLLEPLTEHVNANHEYDVPEVIALPITGGSDKYLEWLKNSTR 181



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.133    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,263,043
Number of extensions: 77809
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 1
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 108 (46.2 bits)