Os10g0370500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Actin-crosslinking proteins family protein.
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Os10g0370500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Actin-crosslinking proteins family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 543.86 | 1.1 | 9.25 | -2.47 | 3.55 | 3.11 | 2.34 | -0.99 | -0.468 | 1.95 | 5.678 | 1525 | 17.2 | -- |
| 535.43 | 1.08 | 9.24 | -2.36 | 3.45 | 3.47 | 2.19 | -- | -0.466 | 1.77 | 4.588 | 1591 | 18.4 | -- |
| 554.26 | 1.1 | 9.25 | -2.39 | 3.41 | 3.31 | -- | -0.818 | -0.47 | 1.82 | 4.642 | 1591 | 18.4 | -- |
| 554.56 | 1.1 | 9.27 | -2.44 | 3.41 | 3.42 | -- | -- | -0.49 | 1.81 | 4.418 | 1597 | 18.5 | -- |
| 657.97 | 1.19 | 9.33 | -3.09 | -- | 4.51 | -- | 2.19 | -0.766 | -- | 5.071 | 1677 | 5.98 | -- |
| 733.72 | 1.27 | 9.4 | -3.02 | 3.57 | -- | 1.77 | -- | -1.09 | 1.77 | -- | -- | -- | -- |
| 745.74 | 1.28 | 9.41 | -3.08 | 3.58 | -- | -- | -- | -1.1 | 1.84 | -- | -- | -- | -- |
| 647.02 | 1.18 | 9.33 | -2.97 | -- | 4.81 | -- | -- | -0.887 | -- | 41.26 | 1603 | 5.52 | -- |
| 686.48 | 1.22 | 9.22 | -- | 3.17 | 4.46 | -- | -- | -0.436 | 1.22 | 3.11 | 1710 | 19.2 | -- |
| 1520.3 | 1.82 | 9.37 | -2.93 | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
| 995.57 | 1.48 | 9.33 | -- | 3.52 | -- | -- | -- | -0.757 | 1.82 | -- | -- | -- | -- |
| 875.34 | 1.38 | 9.27 | -- | -- | 5.04 | -- | -- | -0.577 | -- | 48.45 | 1568 | 5.02 | -- |
| 1747.06 | 1.95 | 9.29 | -- | -- | -- | -- | -- | -0.693 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 565.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 22 |
| 2 | 565.37 | wind | 9 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 3 | 565.67 | wind | 9 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 4 | 566.55 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 7 | 568.47 | radiation | 10 | 1440 | > th | dose independent | rect. | 6 | 9 |
| 21 | 569.46 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 22 | 569.56 | wind | 7 | 4320 | > th | dose independent | rect. | 17 | 4 |
| 23 | 569.58 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 5 |
| 25 | 569.96 | radiation | 10 | 1440 | > th | dose independent | sin | 1 | NA |
| 31 | 570.93 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 46 | 571.24 | wind | 7 | 4320 | > th | dose dependent | rect. | 17 | 4 |
| 47 | 571.58 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 7 |
| 61 | 571.76 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |
| 142 | 571.93 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 20 |
| 143 | 572.04 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 13 |
| 173 | 573.01 | radiation | 10 | 1440 | < th | dose dependent | sin | 21 | NA |
| 174 | 573.05 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 5 |
| 192 | 573.49 | humidity | 70 | 1440 | > th | dose independent | rect. | 18 | 21 |
| 208 | 574.06 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 10 |
| 216 | 575.05 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 16 |
| 250 | 576.03 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 5 |
| 252 | 576.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 22 |
| 324 | 578.06 | wind | 9 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 354 | 578.98 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 361 | 579.08 | humidity | 70 | 1440 | < th | dose independent | rect. | 13 | 1 |
| 390 | 579.63 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 392 | 579.64 | humidity | 70 | 1440 | < th | dose independent | sin | 23 | NA |
| 440 | 580.04 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 454 | 580.31 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 22 |
| 464 | 580.43 | humidity | 70 | 1440 | < th | dose independent | rect. | 10 | 22 |
| 485 | 580.58 | humidity | 60 | 1440 | > th | dose dependent | rect. | 3 | 13 |
| 489 | 580.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 10 | 14 |
| 506 | 580.89 | humidity | 70 | 1440 | > th | dose independent | sin | 23 | NA |
| 582 | 582.28 | wind | 7 | 1440 | > th | dose independent | rect. | 15 | 19 |
| 593 | 582.43 | wind | 7 | 1440 | < th | dose independent | rect. | 15 | 19 |
| 633 | 582.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 4 | 20 |
| 640 | 582.82 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 685 | 582.94 | humidity | 70 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 689 | 582.96 | humidity | 70 | 1440 | > th | dose independent | no | NA | NA |
| 698 | 582.97 | humidity | 70 | 1440 | > th | dose independent | rect. | 21 | 23 |
| 745 | 583.25 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 823 | 583.50 | humidity | 60 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 844 | 583.56 | humidity | 70 | 1440 | < th | dose independent | no | NA | NA |
| 909 | 583.67 | humidity | 70 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 974 | 583.96 | radiation | 20 | 1440 | < th | dose dependent | rect. | 19 | 23 |