Os10g0370000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein phosphatase 2C-like domain containing protein.
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Os10g0370000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein phosphatase 2C-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.04 | 0.244 | 13 | 0.289 | 0.73 | -0.843 | -0.951 | 0.932 | -0.0108 | 7.79 | 25.7 | 14 | -- | -- |
| 27.19 | 0.245 | 13 | 0.189 | 0.74 | -0.752 | -0.932 | -- | -0.0366 | 7.67 | 25.7 | 14 | -- | -- |
| 29.2 | 0.254 | 13 | 0.234 | 0.763 | -0.751 | -- | 0.93 | -0.0319 | 7.28 | 26.25 | 13 | -- | -- |
| 29.43 | 0.254 | 13 | 0.151 | 0.755 | -0.68 | -- | -- | -0.041 | 7.32 | 25.71 | 8 | -- | -- |
| 44.89 | 0.312 | 13 | 0.487 | -- | -1.16 | -- | 1.82 | 0.137 | -- | 23.9 | 340 | -- | -- |
| 35.64 | 0.28 | 13 | 0.0629 | 0.876 | -- | -0.452 | -- | -0.0753 | 6.48 | -- | -- | -- | -- |
| 36.09 | 0.281 | 13 | 0.0556 | 0.876 | -- | -- | -- | -0.0744 | 6.35 | -- | -- | -- | -- |
| 47.03 | 0.319 | 13 | 0.256 | -- | -1 | -- | -- | 0.0577 | -- | 23.79 | 325 | -- | -- |
| 30.01 | 0.257 | 13 | -- | 0.769 | -0.651 | -- | -- | -0.0704 | 7.16 | 26.3 | 2 | -- | -- |
| 75.91 | 0.407 | 13 | 0.0786 | -- | -- | -- | -- | -0.0557 | -- | -- | -- | -- | -- |
| 36.17 | 0.281 | 13 | -- | 0.876 | -- | -- | -- | -0.0806 | 6.34 | -- | -- | -- | -- |
| 48.68 | 0.325 | 13 | -- | -- | -0.964 | -- | -- | 0.0211 | -- | 23.95 | 314 | -- | -- |
| 76.07 | 0.407 | 13 | -- | -- | -- | -- | -- | -0.0644 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.44 | temperature | 20 | 270 | > th | dose dependent | rect. | 7 | 9 |
| 2 | 23.48 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 16 |
| 7 | 23.69 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 11 |
| 16 | 23.82 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 21 | 23.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 22 | 23.92 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 7 |
| 23 | 23.92 | temperature | 10 | 270 | > th | dose dependent | sin | 3 | NA |
| 28 | 23.98 | temperature | 20 | 270 | > th | dose dependent | sin | 3 | NA |
| 30 | 24.00 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 9 |
| 101 | 24.67 | temperature | 15 | 10 | > th | dose dependent | rect. | 1 | 17 |
| 125 | 24.79 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 254 | 25.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 10 | 17 |
| 394 | 25.79 | temperature | 25 | 270 | < th | dose independent | sin | 2 | NA |
| 441 | 25.93 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 16 |
| 534 | 26.13 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 9 |
| 540 | 26.14 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 8 |
| 611 | 26.31 | temperature | 30 | 10 | < th | dose independent | rect. | 5 | 9 |
| 625 | 26.33 | temperature | 25 | 270 | > th | dose independent | rect. | 1 | 15 |
| 652 | 26.37 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 6 |
| 659 | 26.39 | humidity | 50 | 270 | > th | dose dependent | rect. | 3 | 9 |
| 671 | 26.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 729 | 26.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 20 |
| 760 | 26.58 | temperature | 25 | 270 | > th | dose independent | sin | 1 | NA |
| 833 | 26.68 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 7 |
| 847 | 26.71 | humidity | 70 | 270 | > th | dose independent | rect. | 3 | 8 |
| 866 | 26.74 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |