BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os10g0370000 Os10g0370000|AK100049
(465 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33500.1 | chr4:16112835-16116243 REVERSE LENGTH=725 272 2e-73
AT5G66720.1 | chr5:26639015-26640545 REVERSE LENGTH=415 186 2e-47
AT4G16580.1 | chr4:9341152-9342555 REVERSE LENGTH=468 184 7e-47
AT2G30170.1 | chr2:12879802-12881474 REVERSE LENGTH=299 126 2e-29
>AT4G33500.1 | chr4:16112835-16116243 REVERSE LENGTH=725
Length = 724
Score = 272 bits (696), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 132/248 (53%), Positives = 171/248 (68%), Gaps = 1/248 (0%)
Query: 214 VASSTLVLASGAAILPHPSKAATGGEDAYFIACDGWFGVADGVGQWSFEGINAGLYAREL 273
+ S L SG A L P KA G EDAYFI+ W G+ADGV QWSFEGIN G+YA+EL
Sbjct: 474 LVSKAFYLDSGFASLQSPFKALAGREDAYFISHHNWIGIADGVSQWSFEGINKGMYAQEL 533
Query: 274 MDGCKKFIMENQGAADIKPEQVLSKAADEAHSPGSSTVLVAHFDGQFLNASNIGDSGFLV 333
M C+K I+ N+ A P QVL ++ +E S GSST L+AH D L+ +NIGDSGF+V
Sbjct: 534 MSNCEK-IISNETAKISDPVQVLHRSVNETKSSGSSTALIAHLDNNELHIANIGDSGFMV 592
Query: 334 IRNGEVYQKSKPMVYGFNFPLQIEKGDNPLKLVQNYTIELEDGDVIVTASDGLFDNVYEQ 393
IR+G V Q S PM + F FPL I +G + LKL + Y + LE+GDV++ A+DGLFDN+YE+
Sbjct: 593 IRDGTVLQNSSPMFHHFCFPLHITQGCDVLKLAEVYHVNLEEGDVVIAATDGLFDNLYEK 652
Query: 394 EVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKLDDI 453
E+ ++V SL+ L+P +IAE +AAKAQEVGRS TPF+DAA GY G GGKLD +
Sbjct: 653 EIVSIVCGSLKQSLEPQKIAELVAAKAQEVGRSKTERTPFADAAKEEGYNGHKGGKLDAV 712
Query: 454 AVVVSIVR 461
V++S V+
Sbjct: 713 TVIISFVK 720
>AT5G66720.1 | chr5:26639015-26640545 REVERSE LENGTH=415
Length = 414
Score = 186 bits (473), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 108/250 (43%), Positives = 148/250 (59%), Gaps = 6/250 (2%)
Query: 218 TLVLASGAAILPHPSKAATGGEDAYFIACD--GWFGVADGVGQWSFEGINAGLYARELMD 275
+L L SG+ LPHP K ATGGEDA+FI CD GVADGVG W+ G+NAGL++RELM
Sbjct: 167 SLRLVSGSCYLPHPEKEATGGEDAHFI-CDEEQAIGVADGVGGWAEVGVNAGLFSRELMS 225
Query: 276 GCKKFIMENQGAADIKPEQVLSKAADEAHSPGSSTVLVAHFDGQFLNASNIGDSGFLVIR 335
I E + I P VL KA + + GSST + + L+A N+GDSGF V+R
Sbjct: 226 YSVSAIQEQHKGSSIDPLVVLEKAHSQTKAKGSSTACIIVLKDKGLHAINLGDSGFTVVR 285
Query: 336 NGEVYQKSKPMVYGFNFPLQIEKGDNP--LKLVQNYTIELEDGDVIVTASDGLFDNVYEQ 393
G +S +GFNF Q+E G++ Q +TI+++ GDVIV +DG++DN+Y +
Sbjct: 286 EGTTVFQSPVQQHGFNFTYQLESGNSADVPSSGQVFTIDVQSGDVIVAGTDGVYDNLYNE 345
Query: 394 EVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGKLDDI 453
E+ +V S++A L P A+ +A A++ +PF+ AA GY + GGKLDDI
Sbjct: 346 EITGVVVSSVRAGLDPKGTAQKIAELARQRAVDKKRQSPFATAAQEAGYR-YYGGKLDDI 404
Query: 454 AVVVSIVRKS 463
VVS V S
Sbjct: 405 TAVVSYVTSS 414
>AT4G16580.1 | chr4:9341152-9342555 REVERSE LENGTH=468
Length = 467
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 109/255 (42%), Positives = 150/255 (58%), Gaps = 7/255 (2%)
Query: 214 VASSTLVLASGAAILPHPSKAATGGEDAYFIACDGW-FGVADGVGQWSFEGINAGLYARE 272
+ + L L SG+ LPHP K ATGGEDA+FI + GVADGVG W+ GI+AG Y+RE
Sbjct: 211 LCTKPLKLVSGSCYLPHPDKEATGGEDAHFICAEEQALGVADGVGGWAELGIDAGYYSRE 270
Query: 273 LMDGCKKFIMENQGAADIKPEQVLSKAADEAHSPGSSTVLVAHFDGQFLNASNIGDSGFL 332
LM I +++ I P +VL KA S GSST + Q L+A N+GDSGF+
Sbjct: 271 LMSNSVNAI-QDEPKGSIDPARVLEKAHTCTKSQGSSTACIIALTNQGLHAINLGDSGFM 329
Query: 333 VIRNGEVYQKSKPMVYGFNFPLQIEKGDN---PLKLVQNYTIELEDGDVIVTASDGLFDN 389
V+R G +S + FNF Q+E G N P Q +T+ + GDVI+ +DGLFDN
Sbjct: 330 VVREGHTVFRSPVQQHDFNFTYQLESGRNGDLPSS-GQVFTVAVAPGDVIIAGTDGLFDN 388
Query: 390 VYEQEVATMVSKSLQADLKPTEIAEHLAAKAQEVGRSAAGSTPFSDAALAVGYLGFSGGK 449
+Y E+ +V +++A++ P A+ +AA A++ + TPFS AA G+ + GGK
Sbjct: 389 LYNNEITAIVVHAVRANIDPQVTAQKIAALARQRAQDKNRQTPFSTAAQDAGFR-YYGGK 447
Query: 450 LDDIAVVVSIVRKSE 464
LDDI VVVS V S+
Sbjct: 448 LDDITVVVSYVAASK 462
>AT2G30170.1 | chr2:12879802-12881474 REVERSE LENGTH=299
Length = 298
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/263 (33%), Positives = 141/263 (53%), Gaps = 27/263 (10%)
Query: 219 LVLASGAAILPHPSKAATGGEDAYFIAC--DGWFGVADGVGQWSFEGINAGLYARELMDG 276
L L+ G +PHP K GGEDA+F++ G VADGV W+ + ++ L+++ELM
Sbjct: 45 LSLSVGIHAIPHPDKVEKGGEDAFFVSSYRGGVMAVADGVSGWAEQDVDPSLFSKELMAN 104
Query: 277 CKKFIMENQGAADIKPEQVLSKAADEAHSPGSSTVLVAHFDGQ-FLNASNIGDSGFLVIR 335
+ + + + D P ++ KA S GS+T+++A + L N+GD G ++R
Sbjct: 105 ASRLVDDQEVRYD--PGFLIDKAHTATTSRGSATIILAMLEEVGILKIGNVGDCGLKLLR 162
Query: 336 NGEVYQKSKPMVYGFNFPLQIE-KGDNPLKLVQNYTI-ELEDGDVIVTASDGLFDNVYEQ 393
G++ + P + F+ P Q+ +G L +++I E++ GDVIV SDGLFDNV++
Sbjct: 163 EGQIIFATAPQEHYFDCPYQLSSEGSAQTYLDASFSIVEVQKGDVIVMGSDGLFDNVFDH 222
Query: 394 EVATMVSKSLQADLKPTEIAEH---LAAKAQEVGRSAAGSTPFSDAALAVGY-------- 442
E+ ++V+K T++AE LA A R +P++ A A G+
Sbjct: 223 EIVSIVTKH-------TDVAESSRLLAEVASSHSRDTEFESPYALEARAKGFDVPLWKKV 275
Query: 443 LG--FSGGKLDDIAVVVSIVRKS 463
LG +GGKLDD+ V+V+ V S
Sbjct: 276 LGKKLTGGKLDDVTVIVAKVVSS 298
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.313 0.131 0.372
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,383,648
Number of extensions: 269662
Number of successful extensions: 651
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 639
Number of HSP's successfully gapped: 4
Length of query: 465
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 363
Effective length of database: 8,310,137
Effective search space: 3016579731
Effective search space used: 3016579731
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 113 (48.1 bits)