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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0337600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Got1-like protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 5.07 (0.027) R2 : 0.677
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.819 (0.0686) R2dC : 0.096 R2C : 0.0944
β3 : -2.27 (0.0872) R2dE : 0.551 R2E : 0.58
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.106 (0.0602) R2dN8 : 0.00337 R2N8 : 0.0298
σ : 0.498
deviance : 114.11
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_____
C
peak time of C : 19.3
E
wheather : temperature
threshold : 21.04
memory length : 6534
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.93 0.479 5.1 0.531 0.814 -1.4 0.301 2.37 0.219 19.1 23.6 5248 -- --
101.97 0.47 5.04 0.99 0.844 -1.6 0.342 -- 0.293 19.4 22.09 5859 -- --
103.88 0.475 5.09 0.598 0.805 -1.4 -- 2.19 0.23 19.1 23.6 5108 -- --
101.84 0.47 5.03 0.993 0.828 -1.66 -- -- 0.292 19.3 22 5742 -- --
138.51 0.548 5.08 0.563 -- -1.39 -- 2.28 0.215 -- 23.6 5072 -- --
173.55 0.618 4.89 2.02 0.826 -- 0.258 -- 0.921 19.6 -- -- -- --
173.74 0.617 4.89 2.01 0.826 -- -- -- 0.921 19.6 -- -- -- --
137.06 0.545 5.01 1.01 -- -1.65 -- -- 0.278 -- 22.04 5158 -- --
114.11 0.498 5.07 -- 0.819 -2.27 -- -- 0.106 19.3 21.04 6534 -- --
210.27 0.678 4.87 2 -- -- -- -- 0.909 -- -- -- -- --
280.3 0.783 4.94 -- 0.809 -- -- -- 0.698 19.7 -- -- -- --
147.77 0.566 5.05 -- -- -2.26 -- -- 0.105 -- 21 6516 -- --
315.65 0.829 4.92 -- -- -- -- -- 0.687 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 100.32 radiation 1 43200 < th dose dependent rect. 16 13
4 100.45 radiation 1 43200 < th dose independent rect. 17 6
6 100.46 radiation 1 43200 < th dose independent rect. 17 4
10 100.46 radiation 1 43200 < th dose dependent rect. 17 2
20 100.47 radiation 1 43200 < th dose independent rect. 17 2
22 100.47 radiation 1 43200 < th dose independent rect. 17 11
47 100.82 radiation 1 43200 > th dose independent rect. 17 2
74 100.92 radiation 1 43200 < th dose dependent sin 16 NA
81 101.02 radiation 1 43200 < th dose dependent rect. 9 20
93 101.21 radiation 1 43200 < th dose dependent rect. 8 13
99 101.22 radiation 1 43200 < th dose dependent rect. 8 11
180 101.47 radiation 1 43200 < th dose independent rect. 8 13
191 101.48 radiation 1 43200 < th dose independent rect. 8 11
214 101.60 radiation 1 43200 < th dose independent sin 17 NA
263 101.77 radiation 1 43200 < th dose dependent rect. 15 19
309 101.84 radiation 1 43200 > th dose independent rect. 8 11
353 101.93 radiation 1 43200 < th dose dependent rect. 4 15
394 101.95 radiation 1 43200 < th dose dependent no NA NA
464 102.21 radiation 1 43200 > th dose independent sin 17 NA
602 102.94 radiation 1 43200 < th dose dependent rect. 3 3
623 103.02 radiation 1 43200 < th dose dependent rect. 20 10
657 103.24 radiation 1 43200 < th dose independent rect. 15 20
666 103.30 radiation 1 43200 < th dose independent rect. 16 22
707 103.41 radiation 1 43200 < th dose independent rect. 3 16
728 103.42 radiation 1 43200 < th dose independent no NA NA
754 103.42 radiation 1 43200 < th dose dependent rect. 4 9
767 103.45 radiation 1 43200 > th dose independent rect. 15 20
779 103.46 radiation 1 43200 < th dose dependent rect. 20 17
805 103.53 radiation 1 43200 < th dose independent rect. 10 23
878 103.68 radiation 1 43200 > th dose independent no NA NA
926 103.69 temperature 25 4320 < th dose dependent rect. 23 2
970 103.82 radiation 1 43200 > th dose independent rect. 10 23
974 103.84 temperature 20 1440 > th dose dependent rect. 14 17
990 103.90 temperature 25 4320 < th dose dependent rect. 20 11