Os10g0335200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HNH nuclease domain containing protein.
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Os10g0335200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HNH nuclease domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.07 | 0.312 | 10.1 | -0.333 | 0.503 | 0.373 | -0.171 | 1.17 | -0.0221 | 0.958 | 64 | 4047 | -- | -- |
| 45.65 | 0.315 | 10.1 | -0.363 | 0.525 | 0.449 | -0.205 | -- | -0.0162 | 0.609 | 66.57 | 3711 | -- | -- |
| 44.16 | 0.309 | 10.1 | -0.323 | 0.508 | 0.387 | -- | 1.21 | -0.0247 | 0.909 | 64.13 | 3923 | -- | -- |
| 45.35 | 0.314 | 10.1 | -0.349 | 0.499 | 0.362 | -- | -- | -0.0132 | 0.828 | 65.01 | 2489 | -- | -- |
| 57.67 | 0.354 | 10.1 | -0.32 | -- | 0.458 | -- | 0.955 | -0.0222 | -- | 64.07 | 4592 | -- | -- |
| 49.58 | 0.33 | 10.1 | -0.377 | 0.466 | -- | -0.289 | -- | 0.0509 | 0.951 | -- | -- | -- | -- |
| 49.93 | 0.331 | 10.1 | -0.367 | 0.467 | -- | -- | -- | 0.0523 | 0.997 | -- | -- | -- | -- |
| 57.27 | 0.354 | 10.1 | -0.336 | -- | 0.262 | -- | -- | 0.0464 | -- | 70.4 | 6051 | -- | -- |
| 48.09 | 0.323 | 10.1 | -- | 0.498 | 0.423 | -- | -- | -0.0414 | 0.776 | 63.39 | 2487 | -- | -- |
| 63.47 | 0.372 | 10 | -0.349 | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
| 53.47 | 0.342 | 10 | -- | 0.461 | -- | -- | -- | 0.0931 | 0.963 | -- | -- | -- | -- |
| 59.31 | 0.36 | 10 | -- | -- | 0.291 | -- | -- | 0.0895 | -- | 69.93 | 3176 | -- | -- |
| 66.68 | 0.381 | 10 | -- | -- | -- | -- | -- | 0.1 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 18 |
| 4 | 43.58 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 5 | 43.58 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 7 | 43.60 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 1 |
| 15 | 43.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 17 | 43.75 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 26 | 43.82 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 19 |
| 28 | 43.84 | wind | 1.0 | 30 | < th | dose dependent | rect. | 17 | 9 |
| 30 | 43.85 | humidity | 70.0 | 1440 | > th | dose independent | sin | 10 | NA |
| 32 | 43.85 | wind | 1.0 | 30 | < th | dose dependent | rect. | 21 | 5 |
| 77 | 44.08 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 83 | 44.09 | wind | 1.0 | 270 | < th | dose dependent | rect. | 22 | 2 |
| 84 | 44.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 86 | 44.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 6 |
| 107 | 44.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 6 |
| 123 | 44.14 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 13 | 8 |
| 125 | 44.15 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 135 | 44.16 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 141 | 44.18 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 145 | 44.18 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 146 | 44.18 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 153 | 44.21 | wind | 1.0 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 155 | 44.21 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 16 | 2 |
| 165 | 44.22 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 167 | 44.22 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 14 | 4 |
| 180 | 44.25 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 22 |
| 200 | 44.27 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 206 | 44.27 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 10 |
| 208 | 44.28 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 8 |
| 214 | 44.28 | humidity | 60.0 | 4320 | > th | dose independent | rect. | 11 | 17 |
| 220 | 44.28 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 21 |
| 223 | 44.28 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 24 | 5 |
| 224 | 44.28 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 226 | 44.28 | wind | 1.0 | 30 | < th | dose dependent | rect. | 11 | 15 |
| 227 | 44.29 | humidity | 70.0 | 1440 | < th | dose independent | sin | 10 | NA |
| 247 | 44.29 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 5 |
| 277 | 44.30 | wind | 1.0 | 30 | < th | dose dependent | rect. | 13 | 13 |
| 294 | 44.32 | humidity | 60.0 | 4320 | < th | dose independent | rect. | 12 | 7 |
| 311 | 44.32 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 351 | 44.35 | wind | 1.0 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 377 | 44.36 | humidity | 50.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 389 | 44.36 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 11 | 9 |
| 404 | 44.37 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 3 |
| 430 | 44.38 | wind | 9.0 | 14400 | < th | dose dependent | rect. | 24 | 1 |
| 431 | 44.38 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 454 | 44.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 3 |
| 455 | 44.39 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 3 |
| 461 | 44.39 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 2 |
| 462 | 44.39 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 3 |
| 512 | 44.42 | humidity | 70.0 | 4320 | < th | dose dependent | sin | 18 | NA |
| 519 | 44.43 | humidity | 60.0 | 4320 | > th | dose independent | sin | 23 | NA |
| 522 | 44.43 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 531 | 44.43 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 534 | 44.43 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 5 |
| 545 | 44.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 546 | 44.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 11 |
| 552 | 44.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 9 |
| 570 | 44.45 | wind | 3.0 | 14400 | > th | dose independent | rect. | 24 | 1 |
| 572 | 44.45 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 575 | 44.45 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 11 |
| 593 | 44.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 602 | 44.45 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 11 |
| 611 | 44.45 | humidity | 70.0 | 4320 | < th | dose dependent | rect. | 18 | 22 |
| 633 | 44.47 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 654 | 44.48 | humidity | 70.0 | 4320 | < th | dose dependent | no | NA | NA |
| 744 | 44.49 | wind | 1.0 | 270 | < th | dose independent | rect. | 22 | 1 |
| 773 | 44.50 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 784 | 44.51 | temperature | 25.0 | 14400 | < th | dose dependent | sin | 21 | NA |
| 816 | 44.52 | humidity | 60.0 | 4320 | > th | dose independent | no | NA | NA |
| 960 | 44.53 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 10 | 1 |
| 979 | 44.54 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 3 |