BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0335200 Os10g0335200|AK073900
         (178 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G18680.1  | chr1:6432133-6433434 REVERSE LENGTH=187            226   4e-60
AT3G47490.1  | chr3:17498337-17500731 FORWARD LENGTH=235          137   2e-33

>AT1G18680.1 | chr1:6432133-6433434 REVERSE LENGTH=187
          Length = 186

 Score =  226 bits (577), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 99/149 (66%), Positives = 125/149 (83%)

Query: 25  KERPRSFDEKTRSACWRKAAVVMGRHPERWRQDAAGNVVCRRFWSCHGCLCYEYDHIVPF 84
           +ERPR FD K ++ CW  A +V GRHPERWR+D AGN+VC+RF +C+GCLC+EYDHIVP+
Sbjct: 37  EERPRFFDGKAKNKCWANADIVPGRHPERWRKDVAGNIVCKRFGNCNGCLCFEYDHIVPY 96

Query: 85  SKGGESTVDNCQILQTRVNRSKSDKAWIEQAEMQGFSCDIKFTDKELDVIEMAVYGDVIR 144
           SKGGES  +NCQILQTRVNR KS +  ++   ++ +SC ++FTDKELDVIEMAVYGDV+R
Sbjct: 97  SKGGESIAENCQILQTRVNRFKSAQENVDATTLKSYSCGLQFTDKELDVIEMAVYGDVLR 156

Query: 145 PGKQCRCRTVAEMLGKVKSKNQMAACELP 173
           PGK+CRC+TVAE+LG+ KSK+  AACELP
Sbjct: 157 PGKECRCKTVAELLGQSKSKDGKAACELP 185



>AT3G47490.1 | chr3:17498337-17500731 FORWARD LENGTH=235
          Length = 234

 Score =  137 bits (346), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 64/144 (44%), Positives = 89/144 (61%)

Query: 9   DLDGEGTGGGSSAAREKERPRSFDEKTRSACWRKAAVVMGRHPERWRQDAAGNVVCRRFW 68
           D +  G   GS        PRSF    +  CW KA  + GR PERWR+D  GN+V R+  
Sbjct: 89  DREEMGLFPGSGYGDPNPEPRSFPYSVKQQCWEKAEKIKGRDPERWRRDHLGNIVFRKLV 148

Query: 69  SCHGCLCYEYDHIVPFSKGGESTVDNCQILQTRVNRSKSDKAWIEQAEMQGFSCDIKFTD 128
            C GCLC++YDHIVP+SKGG+ST++NCQ+LQ +VNRSK +K  I ++E+   S   +   
Sbjct: 149 GCPGCLCHDYDHIVPYSKGGKSTLENCQVLQAKVNRSKGNKTDISRSELIQRSSYCRVAG 208

Query: 129 KELDVIEMAVYGDVIRPGKQCRCR 152
           +++D+IE+  YG+V R      CR
Sbjct: 209 RDMDLIELTAYGNVQRAPTSSGCR 232



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.132    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,306,979
Number of extensions: 173950
Number of successful extensions: 440
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 441
Number of HSP's successfully gapped: 2
Length of query: 178
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 86
Effective length of database: 8,584,297
Effective search space: 738249542
Effective search space used: 738249542
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)