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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0333700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Plant disease resistance response protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.041) R2 : 0.00632
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.147 (0.0864) R2dN8 : 0.00817 R2N8 : 0.00632
σ : 0.773
deviance : 274.03
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
256.49 0.752 2.94 -0.00278 0.255 1.86 -0.662 4.35 0.165 11.3 19.14 714 -- --
265.49 0.759 2.9 0.0908 0.316 0.309 -0.226 -- 0.194 11.5 22.39 716 -- --
258.04 0.748 2.94 -0.00423 0.269 1.8 -- 3.97 0.17 12.1 18.94 712 -- --
265.46 0.759 2.9 0.0961 0.317 0.313 -- -- 0.198 12.1 22.7 718 -- --
262.32 0.754 2.95 -0.00322 -- 1.98 -- 4.16 0.169 -- 19.06 715 -- --
266.53 0.765 2.9 0.0168 0.341 -- -0.18 -- 0.152 11.9 -- -- -- --
266.66 0.765 2.91 0.00993 0.342 -- -- -- 0.152 12 -- -- -- --
270.85 0.766 2.89 0.131 -- 0.442 -- -- 0.246 -- 26.4 826 -- --
265.65 0.759 2.9 -- 0.314 0.272 -- -- 0.185 12.1 22.8 719 -- --
274.03 0.774 2.91 -0.000645 -- -- -- -- 0.147 -- -- -- -- --
266.66 0.764 2.91 -- 0.342 -- -- -- 0.151 12 -- -- -- --
271.22 0.767 2.9 -- -- 0.387 -- -- 0.221 -- 26.33 807 -- --
274.03 0.773 2.91 -- -- -- -- -- 0.147 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 241.62 radiation 40.0 30 > th dose independent rect. 12 1
2 241.66 temperature 25.0 30 > th dose dependent rect. 12 1
4 242.28 temperature 10.0 1440 > th dose independent rect. 13 1
8 242.28 atmosphere 995.0 1440 > th dose independent rect. 13 1
11 242.28 temperature 10.0 1440 > th dose independent rect. 14 23
14 242.33 radiation 30.0 30 > th dose dependent rect. 12 1
16 242.55 atmosphere 1010.0 30 < th dose independent rect. 12 1
23 243.99 humidity 70.0 30 < th dose independent rect. 12 1
26 244.79 temperature 25.0 30 > th dose independent rect. 12 1
29 245.35 atmosphere 1005.0 30 > th dose independent rect. 12 1
30 245.41 wind 3.0 30 > th dose independent rect. 12 1
35 246.41 wind 7.0 30 < th dose independent rect. 12 1
38 246.74 humidity 50.0 30 > th dose independent rect. 12 1
39 247.01 humidity 90.0 30 < th dose dependent rect. 12 1
41 247.08 wind 1.0 30 > th dose dependent rect. 12 1
43 247.12 temperature 10.0 30 > th dose independent rect. 12 1
45 247.12 atmosphere 995.0 30 > th dose independent rect. 12 1
48 247.12 precipitation 0.1 30 < th dose independent rect. 12 1
49 247.12 temperature 10.0 30 > th dose independent rect. 13 23
50 247.12 precipitation 0.1 30 < th dose dependent rect. 12 1
52 247.39 atmosphere 1015.0 30 < th dose dependent rect. 12 1
53 247.47 radiation 10.0 10 < th dose dependent rect. 10 2
56 247.67 atmosphere 995.0 30 > th dose dependent rect. 12 1
65 248.13 wind 9.0 30 < th dose dependent rect. 12 1
71 248.50 radiation 10.0 30 < th dose independent rect. 11 1
86 249.34 temperature 30.0 30 < th dose independent rect. 12 1
92 249.65 humidity 50.0 30 > th dose dependent rect. 12 1
136 253.28 radiation 1.0 10 < th dose independent rect. 5 1
143 253.45 wind 9.0 30 < th dose independent rect. 13 23
148 253.96 atmosphere 995.0 30 > th dose independent rect. 13 23
150 254.06 atmosphere 1005.0 90 < th dose dependent rect. 8 1
157 254.82 temperature 25.0 90 < th dose independent rect. 11 3
167 255.05 temperature 25.0 270 > th dose dependent rect. 9 4
171 255.19 radiation 10.0 10 < th dose independent rect. 20 17
175 255.25 temperature 25.0 10 < th dose independent rect. 11 4
182 255.35 temperature 25.0 270 > th dose dependent rect. 18 19
194 255.52 temperature 30.0 10 < th dose dependent rect. 11 4
207 255.68 temperature 25.0 270 > th dose dependent rect. 2 11
250 255.90 temperature 30.0 720 < th dose dependent rect. 3 2
256 255.99 wind 5.0 270 > th dose independent rect. 10 4
260 256.02 temperature 20.0 720 < th dose dependent rect. 1 4
284 256.08 temperature 20.0 720 < th dose dependent rect. 2 1
287 256.11 temperature 20.0 720 < th dose dependent rect. 1 11
311 256.21 temperature 10.0 720 > th dose dependent rect. 1 9
313 256.22 temperature 30.0 720 < th dose dependent rect. 2 10
338 256.34 temperature 30.0 270 < th dose dependent rect. 11 1
363 256.45 temperature 20.0 720 < th dose dependent sin 4 NA
378 256.52 temperature 10.0 720 > th dose dependent rect. 23 10
402 256.61 temperature 30.0 720 < th dose dependent rect. 2 5
430 256.72 wind 1.0 90 > th dose dependent rect. 11 4
450 256.81 temperature 30.0 10 > th dose independent rect. 12 22
490 256.95 temperature 15.0 720 > th dose dependent rect. 5 2
494 256.96 temperature 30.0 10 > th dose independent rect. 12 7
516 256.97 precipitation 0.1 30 < th dose independent rect. 13 23
521 256.97 precipitation 0.1 30 < th dose dependent rect. 13 23
539 257.03 atmosphere 1000.0 90 > th dose dependent rect. 11 4
551 257.07 temperature 20.0 720 > th dose independent rect. 5 4
568 257.10 radiation 10.0 90 < th dose independent rect. 19 17
584 257.14 humidity 80.0 90 < th dose independent rect. 11 4
599 257.18 radiation 20.0 10 < th dose dependent rect. 20 17
634 257.30 wind 3.0 90 < th dose dependent rect. 9 1
661 257.37 temperature 25.0 10 > th dose dependent rect. 12 22
677 257.43 temperature 25.0 270 > th dose dependent sin 7 NA
681 257.44 temperature 20.0 720 > th dose independent rect. 5 2
707 257.50 radiation 1.0 10 < th dose dependent rect. 5 1
728 257.53 temperature 30.0 30 < th dose independent rect. 13 23
760 257.57 temperature 20.0 720 < th dose dependent no NA NA
764 257.57 temperature 20.0 720 < th dose dependent rect. 8 23
780 257.61 atmosphere 1010.0 720 > th dose dependent rect. 24 1
781 257.61 temperature 20.0 720 < th dose dependent rect. 10 23
798 257.65 radiation 10.0 10 > th dose independent rect. 12 3
843 257.75 humidity 80.0 10 < th dose independent rect. 12 3
859 257.79 temperature 30.0 10 < th dose independent sin 23 NA
864 257.79 atmosphere 1015.0 1440 > th dose dependent rect. 12 9
872 257.81 temperature 20.0 720 < th dose dependent rect. 5 23
878 257.83 atmosphere 1015.0 1440 > th dose independent rect. 12 1
881 257.83 atmosphere 1015.0 1440 > th dose dependent rect. 12 1
901 257.87 atmosphere 1015.0 1440 < th dose independent rect. 13 1
919 257.88 temperature 25.0 10 > th dose dependent rect. 12 19
932 257.92 atmosphere 1010.0 90 > th dose independent rect. 10 1
933 257.92 temperature 30.0 10 < th dose independent rect. 7 23
972 258.01 wind 3.0 30 < th dose independent rect. 9 1