Os10g0329300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Mevalonate kinase (EC 2.7.1.36) (MK).
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Os10g0329300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Mevalonate kinase (EC 2.7.1.36) (MK).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.04 | 0.226 | 10.1 | 0.542 | 0.398 | 0.526 | -0.646 | -0.404 | 0.283 | 22.2 | 25.6 | 3684 | -- | -- |
| 23.19 | 0.224 | 10.1 | 0.438 | 0.394 | 0.517 | -0.601 | -- | 0.265 | 22.2 | 25.7 | 3684 | -- | -- |
| 24.67 | 0.231 | 10.1 | 0.539 | 0.403 | 0.519 | -- | -0.27 | 0.273 | 22.2 | 25.6 | 3698 | -- | -- |
| 24.67 | 0.231 | 10.1 | 0.463 | 0.398 | 0.506 | -- | -- | 0.253 | 22.3 | 25.67 | 3692 | -- | -- |
| 32.91 | 0.267 | 10.1 | 0.462 | -- | 0.382 | -- | 0.07 | 0.289 | -- | 24.55 | 8778 | -- | -- |
| 29.74 | 0.256 | 10.1 | 0.254 | 0.331 | -- | -0.656 | -- | 0.146 | 22 | -- | -- | -- | -- |
| 31.42 | 0.262 | 10.1 | 0.279 | 0.334 | -- | -- | -- | 0.147 | 22 | -- | -- | -- | -- |
| 32.82 | 0.267 | 10.1 | 0.477 | -- | 0.469 | -- | -- | 0.245 | -- | 25.2 | 4500 | -- | -- |
| 29.66 | 0.254 | 10.1 | -- | 0.401 | 0.359 | -- | -- | 0.177 | 22 | 25.66 | 3706 | -- | -- |
| 38.13 | 0.289 | 10.1 | 0.283 | -- | -- | -- | -- | 0.148 | -- | -- | -- | -- | -- |
| 33.47 | 0.271 | 10.1 | -- | 0.335 | -- | -- | -- | 0.116 | 22.1 | -- | -- | -- | -- |
| 36.94 | 0.283 | 10.1 | -- | -- | 0.271 | -- | -- | 0.135 | -- | 28.9 | 4510 | -- | -- |
| 40.25 | 0.296 | 10.1 | -- | -- | -- | -- | -- | 0.116 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.25 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 19 | 3 |
| 2 | 21.26 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 3 | 21.27 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 20 | 1 |
| 81 | 22.23 | temperature | 20.0 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 96 | 22.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 16 | 22 |
| 108 | 22.41 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 20 | 2 |
| 117 | 22.42 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 20 | 2 |
| 118 | 22.43 | temperature | 25.0 | 4320 | > th | dose independent | sin | 14 | NA |
| 132 | 22.45 | temperature | 25.0 | 4320 | < th | dose independent | sin | 14 | NA |
| 175 | 22.55 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 270 | 22.69 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 9 | 21 |
| 441 | 22.92 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 22 | 12 |
| 450 | 22.93 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 19 |
| 494 | 22.97 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 506 | 22.98 | temperature | 20.0 | 1440 | > th | dose dependent | sin | 9 | NA |
| 586 | 23.03 | temperature | 20.0 | 4320 | > th | dose dependent | sin | 13 | NA |
| 615 | 23.04 | temperature | 15.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 623 | 23.05 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 655 | 23.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 656 | 23.07 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 712 | 23.11 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 12 | 22 |
| 722 | 23.12 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 756 | 23.14 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 8 |
| 810 | 23.18 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 878 | 23.21 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 884 | 23.21 | temperature | 20.0 | 270 | > th | dose dependent | sin | 11 | NA |
| 896 | 23.22 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |