BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0329300 Os10g0329300|AK070755
         (401 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G27450.1  | chr5:9691051-9692975 FORWARD LENGTH=379            354   4e-98

>AT5G27450.1 | chr5:9691051-9692975 FORWARD LENGTH=379
          Length = 378

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 192/378 (50%), Positives = 242/378 (64%), Gaps = 14/378 (3%)

Query: 1   MEVCAARAPGKIILXXXXXXXXXXXXXXXXIDLYTRCSLCLMPXXXXXXXXXXXXXXXXP 60
           MEV  ARAPGKIIL                IDLYT  +L   P                 
Sbjct: 1   MEV-KARAPGKIILAGEHAVVHGSTAVAAAIDLYTYVTL-RFPLPSAENNDRLTLQLKDI 58

Query: 61  GLTFSWPCGRLREVLLTDEAAGAREA-RPCSPDRLASIARLLEEHEIPEAKIWLSAGLSA 119
            L FSW   R++E +  D +   R     CS + L SIA L+EE  +P+ K+WLS+G+S 
Sbjct: 59  SLEFSWSLARIKEAIPYDSSTLCRSTPASCSEETLKSIAVLVEEQNLPKEKMWLSSGIST 118

Query: 120 FLFLYTSILGCRPGKVTVSSDLPMGSGLGSSAAFCVSMSXXXXXXXXXXXXXXXISGEGM 179
           FL+LYT I+G  P  V ++S+LP GSGLGSSAA CV+++                   G 
Sbjct: 119 FLWLYTRIIGFNPATVVINSELPYGSGLGSSAALCVALTAALLASSISEKT------RGN 172

Query: 180 GWELVGKDDLELVNRWAFQGEKIIHGKPSGIDNAVSTFGSMIKFKKGELTNLKSSNPVKM 239
           GW  + + +LEL+N+WAF+GEKIIHGKPSGIDN VS +G+MIKF  GE+T L+S+ P++M
Sbjct: 173 GWSSLDETNLELLNKWAFEGEKIIHGKPSGIDNTVSAYGNMIKFCSGEITRLQSNMPLRM 232

Query: 240 LITDTRVGRNTKALVAGVSERASRHSDAMASVFNAVNXXXXXXXXXXXLAANDEIAITSK 299
           LIT+TRVGRNTKALV+GVS+RA RH DAM SVFNAV+           + + DE ++T K
Sbjct: 233 LITNTRVGRNTKALVSGVSQRAVRHPDAMKSVFNAVD--SISKELAAIIQSKDETSVTEK 290

Query: 300 EEKLAELMEMNQGLLQCMGVSHSSIETVLRTTLKFNLVSKLTGAGGGGCVLTLIPTMLSN 359
           EE++ ELMEMNQGLL  MGVSHSSIE V+ TT+K  LVSKLTGAGGGGCVLTL+PT    
Sbjct: 291 EERIKELMEMNQGLLLSMGVSHSSIEAVILTTVKHKLVSKLTGAGGGGCVLTLLPT---G 347

Query: 360 LVLEKVIAELESHSFRCF 377
            V++KV+ ELES  F+CF
Sbjct: 348 TVVDKVVEELESSGFQCF 365



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,636,327
Number of extensions: 228293
Number of successful extensions: 551
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 547
Number of HSP's successfully gapped: 1
Length of query: 401
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 300
Effective length of database: 8,337,553
Effective search space: 2501265900
Effective search space used: 2501265900
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)