Os10g0197200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Transposase (Fragment).
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Os10g0197200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Transposase (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 176.55 | 0.624 | 3.7 | 0.746 | 0.227 | 2.43 | -0.504 | 0.72 | 0.261 | 15.2 | 25.57 | 636 | -- | -- |
| 176.89 | 0.619 | 3.69 | 0.879 | 0.249 | 2.37 | -0.631 | -- | 0.29 | 15.9 | 26.05 | 621 | -- | -- |
| 176.99 | 0.62 | 3.7 | 0.736 | 0.249 | 2.39 | -- | 0.67 | 0.254 | 14 | 25.54 | 612 | -- | -- |
| 177.57 | 0.621 | 3.68 | 0.854 | 0.256 | 2.33 | -- | -- | 0.281 | 14.2 | 25.75 | 612 | -- | -- |
| 179.09 | 0.623 | 3.7 | 0.754 | -- | 2.43 | -- | 0.673 | 0.265 | -- | 25.8 | 734 | -- | -- |
| 258.93 | 0.754 | 3.79 | 0.204 | 0.49 | -- | 0.16 | -- | -0.23 | 10.8 | -- | -- | -- | -- |
| 259.03 | 0.754 | 3.79 | 0.211 | 0.489 | -- | -- | -- | -0.229 | 10.9 | -- | -- | -- | -- |
| 179.63 | 0.624 | 3.68 | 0.879 | -- | 2.38 | -- | -- | 0.294 | -- | 26.12 | 741 | -- | -- |
| 194.7 | 0.65 | 3.71 | -- | 0.285 | 2 | -- | -- | 0.141 | 14 | 25.8 | 605 | -- | -- |
| 273.86 | 0.773 | 3.8 | 0.2 | -- | -- | -- | -- | -0.233 | -- | -- | -- | -- | -- |
| 260.2 | 0.755 | 3.79 | -- | 0.487 | -- | -- | -- | -0.253 | 10.8 | -- | -- | -- | -- |
| 197.61 | 0.655 | 3.72 | -- | -- | 2.03 | -- | -- | 0.13 | -- | 26.07 | 716 | -- | -- |
| 274.92 | 0.774 | 3.81 | -- | -- | -- | -- | -- | -0.255 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 171.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 16 |
| 5 | 172.41 | temperature | 30 | 720 | < th | dose dependent | sin | 11 | NA |
| 6 | 172.46 | temperature | 10 | 720 | > th | dose dependent | sin | 11 | NA |
| 7 | 172.55 | temperature | 30 | 720 | < th | dose dependent | rect. | 17 | 16 |
| 94 | 176.93 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 22 |
| 153 | 177.85 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 157 | 177.90 | temperature | 25 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 173 | 178.17 | temperature | 25 | 720 | < th | dose dependent | rect. | 24 | 23 |
| 185 | 178.44 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 23 |
| 190 | 178.56 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 204 | 178.85 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 206 | 178.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 8 |
| 966 | 184.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 14 |
| 978 | 184.14 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |