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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0158400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Chalcone synthase J (EC 2.3.1.74) (Naringenin-chalcone synthase J).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.09 (0.0183) R2 : 0.0236
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.128 (0.0386) R2dN8 : 0.0305 R2N8 : 0.0236
σ : 0.345
deviance : 54.66
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
47.07 0.322 3.11 -0.168 0.0993 -0.43 -0.403 1.95 0.0978 6.2 1 16 -- --
50.23 0.33 3.09 -0.0871 0.117 -0.288 -0.618 -- 0.121 5.72 1 16 -- --
47.46 0.321 3.11 -0.175 0.0971 -0.434 -- 2.03 0.0983 6.6 1.04 16 -- --
51 0.333 3.09 -0.0893 0.12 -0.278 -- -- 0.121 6.41 1.005 14 -- --
47.9 0.322 3.11 -0.181 -- -0.482 -- 2.09 0.0999 -- 1.027 16 -- --
51.97 0.338 3.09 -0.0571 0.194 -- -0.544 -- 0.115 5.43 -- -- -- --
52.7 0.34 3.09 -0.0584 0.191 -- -- -- 0.118 5.6 -- -- -- --
51.67 0.335 3.09 -0.093 -- -0.333 -- -- 0.124 -- 1.05 14 -- --
51.21 0.333 3.08 -- 0.122 -0.266 -- -- 0.13 6.4 1 14 -- --
54.59 0.345 3.09 -0.0523 -- -- -- -- 0.122 -- -- -- -- --
52.79 0.34 3.08 -- 0.19 -- -- -- 0.124 5.61 -- -- -- --
51.89 0.336 3.09 -- -- -0.322 -- -- 0.134 -- 1.055 14 -- --
54.66 0.345 3.09 -- -- -- -- -- 0.128 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 39.67 temperature 25.0 90 > th dose dependent rect. 1 3
2 40.14 radiation 10.0 43200 < th dose dependent rect. 3 1
5 40.20 radiation 1.0 4320 < th dose dependent rect. 3 1
7 40.21 temperature 25.0 90 > th dose independent rect. 1 3
16 40.23 wind 9.0 1440 < th dose independent rect. 3 1
17 40.23 temperature 10.0 1440 > th dose independent rect. 3 1
20 40.23 temperature 30.0 1440 < th dose independent rect. 3 1
24 40.23 humidity 50.0 1440 > th dose independent rect. 3 1
33 40.23 atmosphere 995.0 1440 > th dose independent rect. 3 1
34 40.23 radiation 1.0 1440 < th dose independent rect. 3 1
54 40.23 temperature 10.0 1440 > th dose independent rect. 4 23
62 40.26 temperature 20.0 30 > th dose dependent rect. 2 1
65 40.33 atmosphere 1005.0 30 > th dose dependent rect. 2 1
66 40.34 temperature 20.0 30 > th dose independent rect. 2 1
68 40.38 atmosphere 1005.0 30 > th dose independent rect. 2 1
70 40.40 wind 3.0 30 < th dose dependent rect. 2 1
73 40.43 wind 3.0 30 < th dose independent rect. 2 1
77 40.47 humidity 80.0 30 > th dose independent rect. 2 1
81 40.50 humidity 50.0 30 > th dose dependent rect. 2 1
85 40.51 temperature 10.0 30 > th dose independent rect. 2 1
87 40.51 temperature 30.0 30 < th dose independent rect. 2 1
88 40.51 humidity 50.0 30 > th dose independent rect. 2 1
93 40.51 atmosphere 1010.0 30 < th dose independent rect. 2 1
95 40.51 radiation 1.0 30 < th dose independent rect. 2 1
100 40.51 precipitation 0.1 30 < th dose independent rect. 2 1
101 40.51 temperature 10.0 30 > th dose independent rect. 3 23
103 40.51 radiation 1.0 30 < th dose dependent rect. 2 1
108 40.51 precipitation 0.1 30 < th dose dependent rect. 2 1
117 40.69 atmosphere 1015.0 30 < th dose dependent rect. 2 1
119 40.72 atmosphere 1000.0 30 > th dose independent rect. 3 23
122 40.85 temperature 30.0 30 < th dose dependent rect. 2 1
124 40.89 wind 1.0 30 > th dose independent rect. 2 1
138 41.18 precipitation 0.1 30 < th dose independent rect. 3 23
139 41.18 precipitation 0.1 30 < th dose dependent rect. 3 23
182 42.40 wind 9.0 30 < th dose independent rect. 3 23
195 43.10 humidity 50.0 30 > th dose independent rect. 3 23
274 45.41 temperature 30.0 30 < th dose independent rect. 3 23
287 45.65 wind 1.0 10 < th dose independent rect. 9 18
289 45.69 humidity 90.0 90 < th dose independent rect. 2 1
333 46.52 temperature 25.0 1440 < th dose independent rect. 1 1
334 46.53 wind 1.0 10 < th dose independent rect. 2 8
336 46.55 atmosphere 1015.0 30 < th dose independent rect. 3 23
384 47.19 wind 1.0 30 > th dose independent rect. 3 23
394 47.29 wind 1.0 10 < th dose independent rect. 11 16
401 47.32 wind 1.0 10 > th dose independent rect. 5 23
403 47.33 wind 1.0 10 > th dose independent sin 4 NA
410 47.36 wind 1.0 10 < th dose independent rect. 15 12
429 47.44 wind 3.0 30 < th dose dependent rect. 2 8
442 47.52 humidity 90.0 90 < th dose independent rect. 1 5
463 47.73 wind 1.0 10 > th dose independent sin 17 NA
469 47.77 wind 1.0 10 > th dose independent no NA NA
482 47.85 humidity 50.0 30 > th dose dependent rect. 3 23
506 47.95 wind 3.0 30 < th dose dependent rect. 2 11
518 48.00 humidity 70.0 720 > th dose independent rect. 3 6
576 48.20 wind 1.0 10 > th dose independent rect. 21 23
661 48.41 humidity 90.0 720 < th dose dependent rect. 24 4
744 48.53 atmosphere 995.0 30 > th dose dependent rect. 3 23
756 48.56 wind 9.0 30 < th dose dependent rect. 3 23
764 48.58 radiation 20.0 10 < th dose dependent rect. 16 10
784 48.61 radiation 40.0 10 < th dose dependent rect. 14 12
793 48.63 radiation 20.0 10 < th dose dependent rect. 14 12
796 48.64 atmosphere 995.0 720 > th dose independent rect. 23 16
798 48.64 wind 1.0 30 < th dose dependent rect. 9 18
809 48.66 radiation 10.0 10 < th dose dependent rect. 11 15
817 48.68 radiation 1.0 10 < th dose dependent rect. 2 5
823 48.69 wind 1.0 10 > th dose independent rect. 5 21
824 48.69 wind 1.0 10 > th dose independent rect. 8 23
830 48.70 radiation 10.0 30 < th dose independent rect. 16 10
833 48.71 precipitation 0.1 720 < th dose independent rect. 15 8
838 48.71 precipitation 0.1 720 < th dose dependent rect. 15 8
841 48.71 radiation 40.0 30 < th dose dependent rect. 3 23
861 48.75 radiation 10.0 30 < th dose independent rect. 14 12
871 48.77 humidity 70.0 270 > th dose independent rect. 20 13
896 48.78 humidity 80.0 4320 < th dose dependent rect. 1 1
932 48.81 radiation 10.0 30 < th dose dependent rect. 3 23
935 48.82 temperature 10.0 720 > th dose independent rect. 15 8
940 48.82 temperature 10.0 720 > th dose independent rect. 23 16
947 48.82 wind 9.0 10 < th dose dependent rect. 2 12
950 48.83 atmosphere 1000.0 10 > th dose independent rect. 16 10
961 48.83 wind 9.0 10 < th dose dependent rect. 2 14
965 48.85 wind 1.0 10 < th dose independent sin 4 NA
967 48.85 temperature 25.0 720 < th dose independent rect. 21 5
977 48.86 wind 1.0 10 < th dose independent sin 18 NA