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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0138300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.11 (0.0205) R2 : 0.000314
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0163 (0.0431) R2dN8 : 0.000406 R2N8 : 0.000314
σ : 0.386
deviance : 68.36
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
64.07 0.376 2.97 0.895 0.0596 1.81 0.0383 -11.5 0.0494 8.55 1000 139 -- --
66.06 0.381 3.1 0.13 0.0622 -0.208 0.121 -- 0.0496 10 1000 139 -- --
64.07 0.373 2.97 0.894 0.0609 1.81 -- -11.5 0.0491 8.12 1000 143 -- --
65.54 0.377 3.11 0.12 0.0871 -0.236 -- -- 0.0445 9.52 1001 893 -- --
64.27 0.373 2.97 0.907 -- 1.84 -- -11.6 0.0499 -- 1000 138 -- --
67.27 0.385 3.11 0.168 0.0602 -- 0.146 -- 0.0353 10.6 -- -- -- --
67.33 0.384 3.11 0.173 0.0659 -- -- -- 0.0351 9.15 -- -- -- --
65.77 0.378 3.1 0.129 -- -0.273 -- -- 0.055 -- 1001 896 -- --
65.89 0.378 3.1 -- 0.074 -0.299 -- -- 0.0424 9.19 1001 896 -- --
67.58 0.384 3.11 0.172 -- -- -- -- 0.0355 -- -- -- -- --
68.11 0.386 3.11 -- 0.066 -- -- -- 0.0159 8.96 -- -- -- --
66.2 0.379 3.11 -- -- -0.294 -- -- 0.0427 -- 1001 896 -- --
68.36 0.386 3.11 -- -- -- -- -- 0.0163 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 60.49 atmosphere 1005.0 30 > th dose dependent rect. 2 1
2 60.50 wind 3.0 30 < th dose dependent rect. 2 1
3 60.50 temperature 20.0 30 > th dose dependent rect. 2 1
4 60.51 wind 1.0 30 < th dose independent rect. 2 1
5 60.52 radiation 1.0 14400 < th dose dependent rect. 3 1
8 60.54 temperature 20.0 30 > th dose independent rect. 2 1
9 60.55 atmosphere 1005.0 30 > th dose independent rect. 2 1
15 60.58 humidity 90.0 30 > th dose independent rect. 2 1
18 60.60 humidity 70.0 30 > th dose dependent rect. 2 1
20 60.61 temperature 25.0 30 < th dose independent rect. 2 1
27 60.66 temperature 10.0 30 > th dose independent rect. 2 1
30 60.66 humidity 50.0 30 > th dose independent rect. 2 1
34 60.66 atmosphere 1010.0 30 < th dose independent rect. 2 1
36 60.66 radiation 1.0 30 < th dose independent rect. 2 1
41 60.66 precipitation 0.1 30 < th dose independent rect. 2 1
42 60.66 temperature 10.0 30 > th dose independent rect. 3 23
43 60.66 radiation 1.0 30 < th dose dependent rect. 2 1
48 60.66 precipitation 0.1 30 < th dose dependent rect. 2 1
50 60.93 atmosphere 1015.0 30 < th dose dependent rect. 2 1
51 60.96 wind 9.0 30 < th dose independent rect. 3 23
54 61.05 temperature 30.0 30 < th dose dependent rect. 2 1
65 61.45 atmosphere 1000.0 90 < th dose independent rect. 16 9
67 61.45 atmosphere 1000.0 90 < th dose dependent rect. 16 8
71 61.50 wind 1.0 30 > th dose independent rect. 2 1
74 61.57 atmosphere 1000.0 90 < th dose independent rect. 16 17
80 61.67 atmosphere 1000.0 90 < th dose independent sin 10 NA
84 61.73 atmosphere 1000.0 270 < th dose independent sin 12 NA
86 61.77 atmosphere 1000.0 270 > th dose independent sin 13 NA
87 61.77 atmosphere 1000.0 270 < th dose independent rect. 16 15
92 61.80 atmosphere 1000.0 90 < th dose independent rect. 16 19
93 61.80 precipitation 0.1 720 > th dose dependent rect. 17 1
101 61.84 atmosphere 1000.0 10 < th dose independent sin 9 NA
131 61.88 wind 9.0 720 > th dose dependent rect. 17 1
136 61.89 wind 9.0 720 > th dose dependent rect. 17 6
147 61.90 atmosphere 1000.0 720 < th dose independent rect. 19 5
163 61.95 atmosphere 1000.0 90 < th dose dependent rect. 22 1
164 61.95 atmosphere 1000.0 10 < th dose dependent rect. 23 1
173 61.95 atmosphere 1000.0 270 < th dose dependent rect. 17 4
175 61.95 atmosphere 1000.0 10 < th dose dependent rect. 17 7
179 61.96 wind 1.0 270 < th dose independent rect. 19 1
181 61.96 atmosphere 1000.0 270 < th dose independent rect. 19 1
182 61.96 atmosphere 1000.0 90 < th dose independent rect. 23 2
183 61.96 wind 1.0 270 < th dose dependent rect. 19 1
185 61.96 atmosphere 1000.0 270 < th dose dependent rect. 19 1
190 61.96 atmosphere 1000.0 10 < th dose dependent rect. 19 5
197 61.97 wind 9.0 1440 < th dose independent rect. 3 1
198 61.97 temperature 10.0 1440 > th dose independent rect. 3 1
201 61.97 temperature 30.0 1440 < th dose independent rect. 3 1
205 61.97 humidity 50.0 1440 > th dose independent rect. 3 1
214 61.97 atmosphere 995.0 1440 > th dose independent rect. 3 1
215 61.97 radiation 1.0 1440 < th dose independent rect. 3 1
237 61.97 temperature 10.0 1440 > th dose independent rect. 4 23
264 61.99 atmosphere 1000.0 10 < th dose independent rect. 23 3
265 61.99 atmosphere 1000.0 270 < th dose independent rect. 19 12
277 62.00 atmosphere 1000.0 10 < th dose independent rect. 23 1
295 62.00 atmosphere 1000.0 90 < th dose independent rect. 22 11
405 62.16 atmosphere 1000.0 10 < th dose independent rect. 18 8
465 62.24 wind 9.0 720 > th dose independent rect. 17 1
496 62.27 wind 7.0 720 > th dose dependent rect. 14 1
515 62.30 wind 9.0 720 > th dose dependent rect. 14 4
522 62.32 wind 9.0 720 > th dose dependent sin 13 NA
553 62.37 atmosphere 1000.0 1440 > th dose independent rect. 23 1
621 62.45 atmosphere 1000.0 10 < th dose independent rect. 23 11
722 62.60 atmosphere 1000.0 90 > th dose independent sin 8 NA
736 62.61 atmosphere 1000.0 10 < th dose independent rect. 17 17
777 62.65 atmosphere 1000.0 270 < th dose dependent sin 12 NA
803 62.68 atmosphere 1000.0 10 < th dose dependent rect. 23 11
835 62.70 atmosphere 995.0 30 > th dose independent rect. 3 23
854 62.72 atmosphere 1000.0 30 < th dose dependent sin 10 NA
869 62.74 atmosphere 1000.0 90 < th dose dependent rect. 16 18
891 62.78 wind 1.0 90 < th dose independent rect. 20 4
896 62.78 atmosphere 1000.0 270 < th dose dependent rect. 19 12
914 62.80 atmosphere 1000.0 10 < th dose dependent rect. 19 15