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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os10g0134700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein kinase-like domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.89 (0.0434) R2 : 0.471
β1 : 1.04 (0.164) R2dD : 0.052 R2D : -0.00301
β2 : 1.36 (0.112) R2dC : 0.175 R2C : 0.134
β3 : 1.09 (0.127) R2dE : 0.0905 R2E : 0.0679
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 1.01 (0.0927) R2dN8 : 0.188 R2N8 : 0.121
σ : 0.81
deviance : 302.36
__
_____
C
peak time of C : 7.13
E
wheather : temperature
threshold : 25.95
memory length : 2655
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.18 0.795 5.1 -0.713 1.39 1.89 1.1 -7.58 0.692 7.27 26.66 1229 -- --
300.57 0.807 4.9 0.936 1.29 1.14 0.615 -- 0.95 7.1 25.83 2630 -- --
289.38 0.792 5.1 -0.727 1.39 1.89 -- -7.65 0.685 7.18 26.7 1247 -- --
302.36 0.81 4.89 1.04 1.36 1.09 -- -- 1.01 7.13 25.95 2655 -- --
387.68 0.917 5.13 -0.602 -- 1.77 -- -6.7 0.694 -- 26.46 1316 -- --
345.32 0.871 4.88 1.38 1.37 -- 1.16 -- 1.07 6.73 -- -- -- --
348.69 0.874 4.88 1.4 1.37 -- -- -- 1.07 6.65 -- -- -- --
396.19 0.927 4.92 1.13 -- 1.09 -- -- 1.08 -- 26.65 1337 -- --
328.35 0.844 4.94 -- 1.37 1.32 -- -- 0.816 7.19 24.6 2685 -- --
447.06 0.988 4.91 1.43 -- -- -- -- 1.09 -- -- -- -- --
400.29 0.936 4.92 -- 1.39 -- -- -- 0.91 6.59 -- -- -- --
401.24 0.933 5.05 -- -- 1.65 -- -- 0.48 -- 13.12 24355 -- --
501.12 1.04 4.95 -- -- -- -- -- 0.934 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 286.76 wind 3.0 90 > th dose independent rect. 13 8
2 286.83 wind 3.0 30 < th dose independent rect. 3 6
6 288.30 temperature 25.0 1440 > th dose dependent rect. 14 1
14 290.74 temperature 10.0 270 > th dose dependent rect. 1 6
16 290.79 wind 3.0 90 < th dose independent rect. 3 4
20 290.91 wind 7.0 90 < th dose dependent rect. 3 6
25 291.07 temperature 25.0 1440 > th dose dependent rect. 12 19
26 291.14 wind 5.0 270 < th dose independent rect. 1 6
30 291.36 temperature 25.0 1440 > th dose dependent rect. 12 9
54 291.72 radiation 20.0 90 < th dose independent rect. 3 6
74 292.07 temperature 30.0 1440 < th dose independent rect. 14 1
76 292.12 wind 5.0 270 < th dose independent rect. 3 1
83 292.29 radiation 40.0 1440 < th dose dependent rect. 23 7
85 292.34 temperature 10.0 90 > th dose dependent rect. 3 18
96 292.60 wind 7.0 270 < th dose dependent rect. 1 6
106 292.72 temperature 25.0 1440 > th dose dependent sin 18 NA
109 292.76 temperature 15.0 270 > th dose dependent rect. 2 4
120 292.87 humidity 50.0 90 > th dose dependent rect. 21 6
142 293.20 wind 7.0 270 < th dose dependent rect. 3 1
151 293.38 wind 7.0 90 < th dose dependent rect. 3 4
153 293.39 humidity 70.0 90 > th dose independent rect. 3 6
158 293.54 wind 1.0 90 > th dose dependent rect. 13 9
160 293.57 radiation 40.0 90 < th dose dependent rect. 3 6
170 293.76 temperature 15.0 90 > th dose independent rect. 21 6
182 293.86 radiation 10.0 270 < th dose independent rect. 1 6
188 293.93 temperature 30.0 1440 > th dose independent rect. 14 1
215 294.43 temperature 15.0 90 > th dose independent rect. 3 18
219 294.46 humidity 50.0 90 > th dose dependent rect. 3 6
225 294.60 temperature 25.0 1440 > th dose dependent rect. 5 17
271 294.73 temperature 25.0 1440 > th dose dependent rect. 19 23
273 294.74 temperature 10.0 270 > th dose dependent rect. 3 1
278 294.75 temperature 25.0 1440 > th dose dependent no NA NA
291 294.81 precipitation 0.1 270 < th dose independent rect. 3 1
292 294.81 precipitation 0.1 270 < th dose dependent rect. 3 1
294 294.81 radiation 40.0 1440 < th dose dependent rect. 18 12
301 294.85 temperature 30.0 1440 > th dose independent rect. 13 3
368 295.19 temperature 10.0 270 > th dose dependent rect. 13 18
398 295.39 precipitation 0.1 90 < th dose independent rect. 21 6
399 295.39 precipitation 0.1 90 < th dose dependent rect. 21 6
407 295.44 precipitation 0.1 10 < th dose independent rect. 3 6
408 295.44 precipitation 0.1 10 < th dose dependent rect. 3 6
409 295.45 precipitation 0.1 270 < th dose independent rect. 1 6
410 295.45 precipitation 0.1 270 < th dose dependent rect. 1 6
413 295.51 precipitation 0.1 90 < th dose independent rect. 3 4
414 295.51 precipitation 0.1 90 < th dose dependent rect. 3 4
433 295.67 radiation 1.0 1440 > th dose dependent rect. 4 2
449 295.74 radiation 10.0 90 < th dose independent rect. 3 4
468 295.87 temperature 25.0 1440 > th dose dependent rect. 6 1
484 295.95 precipitation 0.1 90 < th dose independent rect. 3 6
485 295.95 precipitation 0.1 90 < th dose dependent rect. 3 6
491 296.02 radiation 1.0 90 < th dose dependent rect. 21 6
493 296.03 temperature 30.0 90 < th dose independent rect. 21 6
494 296.03 humidity 50.0 90 > th dose independent rect. 21 6
497 296.03 atmosphere 995.0 90 > th dose independent rect. 21 6
498 296.03 radiation 1.0 90 < th dose independent rect. 21 6
504 296.03 atmosphere 1015.0 90 < th dose independent rect. 3 18
509 296.05 precipitation 0.1 90 < th dose independent rect. 7 20
510 296.05 precipitation 0.1 90 < th dose dependent rect. 7 20
512 296.09 humidity 70.0 90 > th dose independent rect. 3 4
520 296.18 temperature 30.0 1440 < th dose independent rect. 13 21
522 296.19 wind 9.0 90 < th dose independent rect. 21 6
523 296.19 temperature 30.0 1440 < th dose independent rect. 9 7
532 296.31 radiation 10.0 1440 < th dose dependent rect. 3 3
536 296.34 precipitation 0.1 10 < th dose independent rect. 9 18
540 296.34 precipitation 0.1 10 < th dose dependent rect. 9 18
541 296.35 temperature 30.0 1440 < th dose independent rect. 13 15
542 296.35 precipitation 0.1 270 < th dose independent rect. 2 16
543 296.35 precipitation 0.1 270 < th dose dependent rect. 2 16
546 296.38 wind 1.0 270 > th dose independent rect. 3 1
552 296.46 humidity 50.0 90 > th dose independent rect. 7 20
561 296.49 temperature 30.0 1440 < th dose independent rect. 13 11
565 296.52 wind 9.0 90 < th dose independent rect. 3 18
583 296.65 temperature 30.0 1440 > th dose independent rect. 14 20
587 296.68 humidity 70.0 270 > th dose independent rect. 1 6
589 296.70 temperature 30.0 1440 < th dose independent rect. 22 18
601 296.75 temperature 30.0 1440 < th dose independent rect. 2 14
604 296.75 precipitation 0.1 90 < th dose independent rect. 3 18
607 296.75 precipitation 0.1 90 < th dose dependent rect. 3 18
618 296.80 atmosphere 1005.0 30 > th dose independent rect. 3 4
633 296.86 radiation 30.0 270 < th dose dependent rect. 1 6
636 296.87 radiation 1.0 14400 < th dose independent rect. 18 10
638 296.88 radiation 1.0 14400 < th dose independent rect. 18 8
692 297.02 radiation 1.0 14400 < th dose independent rect. 18 2
712 297.14 radiation 1.0 14400 > th dose independent rect. 18 1
734 297.21 temperature 10.0 270 > th dose independent rect. 1 6
736 297.21 temperature 30.0 270 < th dose independent rect. 1 6
737 297.21 humidity 50.0 270 > th dose independent rect. 1 6
739 297.21 atmosphere 995.0 270 > th dose independent rect. 1 6
740 297.21 atmosphere 1015.0 270 < th dose independent rect. 1 6
742 297.21 temperature 10.0 270 > th dose independent rect. 7 18
745 297.23 radiation 1.0 270 < th dose dependent rect. 5 21
749 297.25 temperature 20.0 43200 > th dose independent rect. 18 1
752 297.26 temperature 10.0 90 > th dose independent rect. 3 4
754 297.26 temperature 30.0 90 < th dose independent rect. 3 4
755 297.26 humidity 50.0 90 > th dose independent rect. 3 4
757 297.26 atmosphere 995.0 90 > th dose independent rect. 3 4
758 297.26 atmosphere 1015.0 90 < th dose independent rect. 3 4
760 297.26 temperature 10.0 90 > th dose independent rect. 7 20
779 297.35 wind 9.0 270 < th dose independent rect. 7 18
785 297.39 temperature 30.0 1440 > th dose independent rect. 9 7
786 297.39 temperature 10.0 90 > th dose dependent rect. 15 16
788 297.40 temperature 15.0 30 > th dose independent rect. 9 18
813 297.52 radiation 40.0 1440 < th dose independent rect. 14 19
826 297.57 wind 3.0 43200 < th dose independent rect. 3 1
834 297.59 temperature 15.0 270 > th dose independent rect. 18 8
841 297.62 radiation 40.0 10 < th dose dependent rect. 3 6
848 297.68 temperature 20.0 43200 > th dose independent rect. 17 3
853 297.72 radiation 40.0 1440 > th dose independent rect. 14 19
854 297.72 humidity 90.0 43200 > th dose dependent rect. 22 1
858 297.74 radiation 1.0 14400 < th dose dependent rect. 18 10
861 297.76 temperature 15.0 270 > th dose independent rect. 2 16
864 297.76 radiation 1.0 14400 < th dose dependent rect. 18 8
866 297.77 atmosphere 995.0 90 > th dose independent rect. 7 20
872 297.79 temperature 10.0 90 > th dose independent rect. 3 6
875 297.79 atmosphere 995.0 90 > th dose independent rect. 3 6
876 297.79 atmosphere 1015.0 90 < th dose independent rect. 3 6
880 297.82 humidity 90.0 43200 > th dose independent rect. 22 1
884 297.83 wind 3.0 43200 > th dose independent rect. 3 1
885 297.83 temperature 20.0 43200 < th dose independent rect. 17 3
888 297.86 temperature 30.0 1440 > th dose independent rect. 18 22
891 297.88 radiation 1.0 14400 > th dose independent rect. 18 21
892 297.89 radiation 1.0 14400 < th dose dependent rect. 18 2
914 297.93 temperature 20.0 43200 > th dose independent rect. 11 9
919 297.94 temperature 30.0 90 < th dose independent rect. 3 6
925 297.97 wind 5.0 43200 < th dose dependent rect. 3 1
927 297.98 temperature 25.0 43200 < th dose dependent rect. 14 1
932 297.98 radiation 1.0 1440 < th dose dependent rect. 18 8
936 298.01 humidity 50.0 270 > th dose dependent rect. 1 6
947 298.03 radiation 1.0 270 < th dose dependent rect. 18 8
958 298.07 wind 1.0 43200 > th dose dependent rect. 3 1
977 298.15 temperature 15.0 270 > th dose independent rect. 19 6
985 298.17 temperature 10.0 270 > th dose independent rect. 3 1
987 298.17 temperature 30.0 270 < th dose independent rect. 3 1
988 298.17 humidity 50.0 270 > th dose independent rect. 3 1
991 298.17 atmosphere 995.0 270 > th dose independent rect. 3 1
992 298.17 atmosphere 1010.0 270 < th dose independent rect. 3 1
994 298.17 radiation 1.0 270 < th dose independent rect. 3 1
999 298.17 radiation 1.0 14400 < th dose independent rect. 18 21
1000 298.17 temperature 10.0 270 > th dose independent rect. 4 23