BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0134700 Os10g0134700|Os10g0134700
         (483 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G14460.1  | chr3:4851990-4856264 REVERSE LENGTH=1425            61   1e-09

>AT3G14460.1 | chr3:4851990-4856264 REVERSE LENGTH=1425
          Length = 1424

 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 154/377 (40%), Gaps = 63/377 (16%)

Query: 48  VVEEADGRYITNSGMLMQLKGLADAMYRGHHVLDMLRCRTLTQENSIKEVQVGSPFPPLK 107
           V+ +AD R      +   L G+ DA ++   +LD L+   L +    +   +G  F  L 
Sbjct: 49  VLADADQRAEHVREVKHWLTGIKDAFFQAEDILDELQTEALRRRVVAEAGGLGGLFQNLM 108

Query: 108 RFRAIVDAAGKDKARYFEIHRTLEILETAVDHMPEFVVLLGGCE-------RMSR-RPYD 159
             R  +    + K     + + + +LE  V H+ E + L    E       + SR RP D
Sbjct: 109 AGREAIQKKIEPK-----MEKVVRLLEHHVKHI-EVIGLKEYSETREPQWRQASRSRPDD 162

Query: 160 AYLYIDNFMFGRHTEKQRLLNFLLEYNPPSL--PAVLPIVGGHAVGKKTLIAHVCADERV 217
                   + GR  +K  L+N LL  +  S+  PAV+ +VG   VGK TL   V  D RV
Sbjct: 163 ---LPQGRLVGRVEDKLALVNLLLSDDEISIGKPAVISVVGMPGVGKTTLTEIVFNDYRV 219

Query: 218 QSQF------------------SSILH------LNEDDL--LRIAHSDTLLSGKMLVVVE 251
              F                   ++L       +N +DL  L+I    TL   + L+V++
Sbjct: 220 TEHFEVKMWISAGINFNVFTVTKAVLQDITSSAVNTEDLPSLQIQLKKTLSGKRFLLVLD 279

Query: 252 FVSDLNEKNWEEFYTSLAQMNEGSKVITISRFRKSEKLGTV----KPILLDIHSHEELTY 307
                ++  WE F  +     EGSK++  +R   SE + TV    K   + + ++EE   
Sbjct: 280 DFWSESDSEWESFQVAFTDAEEGSKIVLTTR---SEIVSTVAKAEKIYQMKLMTNEECWE 336

Query: 308 LFKTLAFGSANPMD-HPRLLQVAEEFAMQLQLRGSLISVNICADVLRWNLDVNFWISILN 366
           L    AFG+ +    +  L  + +  A   Q +G  ++    A  LR   + + W ++  
Sbjct: 337 LISRFAFGNISVGSINQELEGIGKRIAE--QCKGLPLAARAIASHLRSKPNPDDWYAV-- 392

Query: 367 RCITVAEKNFSLYGKHV 383
                  KNFS Y   +
Sbjct: 393 ------SKNFSSYTNSI 403



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.137    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,388,600
Number of extensions: 429847
Number of successful extensions: 960
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 960
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 381
Effective length of database: 8,310,137
Effective search space: 3166162197
Effective search space used: 3166162197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)