Os10g0130700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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Os10g0130700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Reverse transcriptase, RNA-dependent DNA polymerase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = atmosphere,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 188.6 | 0.645 | 2.71 | 3.34 | 0.0273 | -43.5 | 1.06 | 267 | 0.0763 | 19.7 | 995 | 686 | -- | -- |
| 196.68 | 0.658 | 3.25 | 0.0792 | 0.0222 | 0.0207 | 1.05 | -- | 0.0663 | 20.1 | 995 | 686 | -- | -- |
| 190.26 | 0.642 | 2.75 | 3.03 | 0.114 | -43.9 | -- | 271 | 0.0792 | 14.7 | 994.7 | 649 | -- | -- |
| 196.23 | 0.652 | 3.26 | 0.0225 | 0.0078 | 0.867 | -- | -- | 0.0485 | 19.7 | 994.7 | 674 | -- | -- |
| 190.98 | 0.644 | 2.73 | 3.15 | -- | -45.8 | -- | 282 | 0.0788 | -- | 994.7 | 684 | -- | -- |
| 196.68 | 0.657 | 3.25 | 0.0794 | 0.0225 | -- | 1.05 | -- | 0.0662 | 20.1 | -- | -- | -- | -- |
| 199.62 | 0.662 | 3.25 | 0.0528 | 0.0888 | -- | -- | -- | 0.0691 | 15.4 | -- | -- | -- | -- |
| 196.16 | 0.652 | 3.25 | 0.0251 | -- | 0.89 | -- | -- | 0.0768 | -- | 994.7 | 667 | -- | -- |
| 195.62 | 0.651 | 3.24 | -- | 0.0903 | 0.865 | -- | -- | 0.0936 | 14.3 | 994.6 | 706 | -- | -- |
| 200.06 | 0.661 | 3.25 | 0.0491 | -- | -- | -- | -- | 0.0667 | -- | -- | -- | -- | -- |
| 199.69 | 0.661 | 3.25 | -- | 0.0878 | -- | -- | -- | 0.0632 | 15.4 | -- | -- | -- | -- |
| 196.16 | 0.652 | 3.25 | -- | -- | 0.915 | -- | -- | 0.0873 | -- | 994.6 | 705 | -- | -- |
| 200.12 | 0.66 | 3.25 | -- | -- | -- | -- | -- | 0.0613 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 180.33 | radiation | 40 | 10 | > th | dose dependent | sin | 12 | NA |
| 2 | 180.49 | humidity | 60 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 3 | 180.54 | radiation | 40 | 10 | > th | dose dependent | rect. | 9 | 1 |
| 22 | 180.59 | wind | 1 | 10 | < th | dose independent | rect. | 2 | 8 |
| 25 | 180.79 | wind | 1 | 10 | < th | dose independent | rect. | 2 | 11 |
| 47 | 181.05 | humidity | 60 | 30 | < th | dose independent | rect. | 18 | 17 |
| 51 | 181.46 | humidity | 60 | 30 | < th | dose dependent | rect. | 18 | 17 |
| 54 | 181.56 | humidity | 60 | 1440 | > th | dose independent | rect. | 8 | 1 |
| 61 | 181.84 | humidity | 60 | 1440 | > th | dose independent | rect. | 21 | 12 |
| 62 | 181.86 | radiation | 40 | 10 | > th | dose independent | rect. | 9 | 1 |
| 82 | 181.87 | wind | 1 | 10 | < th | dose independent | rect. | 2 | 14 |
| 84 | 181.90 | humidity | 60 | 10 | < th | dose independent | rect. | 10 | 1 |
| 101 | 181.90 | humidity | 60 | 10 | < th | dose dependent | rect. | 10 | 1 |
| 211 | 181.99 | humidity | 60 | 10 | < th | dose dependent | rect. | 16 | 18 |
| 218 | 182.15 | humidity | 60 | 1440 | < th | dose independent | rect. | 8 | 1 |
| 234 | 182.18 | humidity | 60 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 247 | 182.19 | humidity | 60 | 270 | < th | dose independent | rect. | 8 | 1 |
| 261 | 182.19 | humidity | 60 | 1440 | > th | dose independent | rect. | 1 | 8 |
| 274 | 182.19 | humidity | 60 | 270 | < th | dose dependent | rect. | 8 | 1 |
| 339 | 182.35 | wind | 1 | 10 | > th | dose independent | sin | 2 | NA |
| 341 | 182.36 | wind | 1 | 90 | < th | dose dependent | rect. | 9 | 1 |
| 342 | 182.38 | humidity | 60 | 30 | < th | dose independent | rect. | 16 | 18 |
| 374 | 182.47 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 1 |
| 381 | 182.58 | wind | 1 | 10 | < th | dose independent | sin | 2 | NA |
| 405 | 182.70 | wind | 1 | 10 | < th | dose dependent | rect. | 9 | 7 |
| 413 | 182.74 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 1 |
| 433 | 182.85 | humidity | 70 | 270 | < th | dose dependent | rect. | 17 | 1 |
| 437 | 182.89 | humidity | 70 | 270 | < th | dose independent | rect. | 17 | 1 |
| 439 | 182.91 | radiation | 40 | 10 | > th | dose independent | sin | 11 | NA |
| 478 | 183.13 | wind | 1 | 90 | < th | dose independent | rect. | 9 | 1 |
| 560 | 183.40 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 7 |
| 569 | 183.46 | wind | 1 | 10 | < th | dose independent | rect. | 9 | 5 |
| 645 | 184.02 | temperature | 25 | 90 | > th | dose dependent | rect. | 1 | 1 |
| 646 | 184.04 | wind | 1 | 270 | < th | dose independent | rect. | 16 | 1 |
| 647 | 184.04 | wind | 1 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 695 | 184.42 | wind | 1 | 10 | < th | dose dependent | sin | 0 | NA |
| 748 | 184.74 | wind | 1 | 270 | < th | dose dependent | rect. | 16 | 3 |
| 767 | 184.87 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 8 |
| 778 | 184.95 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 11 |
| 822 | 185.35 | wind | 1 | 10 | < th | dose dependent | rect. | 2 | 14 |
| 929 | 185.89 | radiation | 40 | 10 | > th | dose independent | rect. | 12 | 23 |
| 948 | 185.99 | wind | 1 | 10 | > th | dose independent | rect. | 13 | 23 |
| 950 | 186.07 | temperature | 25 | 90 | > th | dose independent | rect. | 1 | 1 |
| 998 | 186.31 | wind | 1 | 10 | < th | dose independent | rect. | 2 | 2 |