BLAST Search Results

BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os10g0130700 Os10g0130700|AK069171
         (1426 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G23160.1  | chr4:12129485-12134086 FORWARD LENGTH=1263         380   e-105
ATMG00810.1  | chrM:227709-228431 REVERSE LENGTH=241              150   4e-36
ATMG00820.1  | chrM:228573-229085 REVERSE LENGTH=171               92   2e-18
ATMG00710.1  | chrM:207553-207915 REVERSE LENGTH=121               71   4e-12
ATMG00240.1  | chrM:68918-69253 REVERSE LENGTH=112                 55   3e-07

>AT4G23160.1 | chr4:12129485-12134086 FORWARD LENGTH=1263
          Length = 1262

 Score =  380 bits (977), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 189/477 (39%), Positives = 288/477 (60%), Gaps = 6/477 (1%)

Query: 908  CLLASEEPMSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKD 967
            C+  ++EP +  EA++ L W  AM +E+ ++E   TW    LP   K IG KWVYK+K +
Sbjct: 79   CIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYN 138

Query: 968  PSGVVVKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVAANKGWEIHHMDVKSA 1027
              G + ++KARLVAKGY QQ+GIDF E F+PV ++ +V+L++A++A   + +H +D+ +A
Sbjct: 139  SDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 198

Query: 1028 FLNGDLEEEVYVVQPPGFIEKGKE----GQVLRLKKALYGLKQAPRAWNAKLHNTLISLN 1083
            FLNGDL+EE+Y+  PPG+  +  +      V  LKK++YGLKQA R W  K   TLI   
Sbjct: 199  FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258

Query: 1084 FIKSETESAVYVRGTGSSRLIVGVYVDDLIISGAQASEIDXXXXXXXXXXRMSDLGLLSY 1143
            F++S ++   +++ T +  L V VYVDD+II     + +D          ++ DLG L Y
Sbjct: 259  FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318

Query: 1144 YLGMEVVQKDDGVFLSQTAYAAKILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMY 1203
            +LG+E+ +   G+ + Q  YA  +L++TG+ GC  + VPM+  +     SGG+ VD+  Y
Sbjct: 319  FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378

Query: 1204 RSTVGSLRYLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFGRRE 1263
            R  +G L YL  TR D++++V  +S+F E P   H  AV  IL YI GT+  G ++    
Sbjct: 379  RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS--S 436

Query: 1264 KGELRLIGFSDSDMAGDLDDRKSTTGVLYMLGDSLISWQSQKQKVVALSSCEAEYIAATT 1323
            + E++L  FSD+      D R+ST G    LG SLISW+S+KQ+VV+ SS EAEY A + 
Sbjct: 437  QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 496

Query: 1324 GACQGIWLNRLLAELLGEDPGQTVMKVDNKSAINLCKNPVLHDRSKHIDTRFHFIRE 1380
               + +WL +   EL       T++  DN +AI++  N V H+R+KHI++  H +RE
Sbjct: 497  ATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553



>ATMG00810.1 | chrM:227709-228431 REVERSE LENGTH=241
          Length = 240

 Score =  150 bits (379), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/224 (36%), Positives = 125/224 (55%), Gaps = 3/224 (1%)

Query: 1107 VYVDDLIISGAQASEIDXXXXXXXXXXRMSDLGLLSYYLGMEVVQKDDGVFLSQTAYAAK 1166
            +YVDD++++G+  + ++           M DLG + Y+LG+++     G+FLSQT YA +
Sbjct: 5    LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 1167 ILEKTGMEGCNSTQVPMEARLKLKRESGGEGVDSTMYRSTVGSLRYLVNTRPDLAYSVGY 1226
            IL   GM  C     P+  +L     S  +  D + +RS VG+L+YL  TRPD++Y+V  
Sbjct: 65   ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 123

Query: 1227 VSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFGRREKGELRLIGFSDSDMAGDLDDRKS 1286
            V + M +PT   +  +K +LRY+ GT+  G +  +  K  L +  F DSD AG    R+S
Sbjct: 124  VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSK--LNVQAFCDSDWAGCTSTRRS 181

Query: 1287 TTGVLYMLGDSLISWQSQKQKVVALSSCEAEYIAATTGACQGIW 1330
            TTG    LG ++ISW +++Q  V+ SS E EY A    A +  W
Sbjct: 182  TTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225



>ATMG00820.1 | chrM:228573-229085 REVERSE LENGTH=171
          Length = 170

 Score = 92.0 bits (227), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 62/100 (62%)

Query: 913  EEPMSLAEAEQQLCWRQAMQEELKSIEDNQTWSFAELPVGHKAIGLKWVYKVKKDPSGVV 972
            +EP S+  A +   W QAMQEEL ++  N+TW     PV    +G KWV+K K    G +
Sbjct: 26   KEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTL 85

Query: 973  VKHKARLVAKGYVQQQGIDFEEVFAPVARMETVRLLIAVA 1012
             + KARLVAKG+ Q++GI F E ++PV R  T+R ++ VA
Sbjct: 86   DRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125



>ATMG00710.1 | chrM:207553-207915 REVERSE LENGTH=121
          Length = 120

 Score = 71.2 bits (173), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 36/102 (35%), Positives = 57/102 (55%), Gaps = 8/102 (7%)

Query: 684 NQTVVAAARSMLKAAGMPACFWGEAVVAAVYVLNRSPTKALNGVTPHEAWHGRRPSVEHL 743
           N+T++   RSML   G+P  F  +A   AV+++N+ P+ A+N   P E W    P+  +L
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYL 61

Query: 744 RVFGCVGYVK----TVKPNLRKLDDRGT----RMVFIGYEQG 777
           R FGCV Y+      +KP  +K +++G+    R+V I Y  G
Sbjct: 62  RRFGCVAYIHCDEGKLKPRAKKGEEKGSYLINRIVSILYTIG 103



>ATMG00240.1 | chrM:68918-69253 REVERSE LENGTH=112
          Length = 111

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 55/109 (50%), Gaps = 11/109 (10%)

Query: 1212 YLVNTRPDLAYSVGYVSRFMEKPTSEHWAAVKHILRYIAGTLDVGCWFGRREKGELRLIG 1271
            YL  TRPDL ++V  +S+F     +    AV  +L Y+ GT+  G ++      +L+L  
Sbjct: 2    YLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYS--ATSDLQLKA 59

Query: 1272 FSDSDMAGDLDDRKSTTGV-----LYMLGDSLISWQS----QKQKVVAL 1311
            F+DSD A   D R+S TG      L+ LG    S  S    Q+Q + AL
Sbjct: 60   FADSDWASCPDTRRSVTGFCSLVPLWFLGALRKSILSPGLLQRQNIEAL 108



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 28,839,831
Number of extensions: 1196554
Number of successful extensions: 2989
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 2986
Number of HSP's successfully gapped: 5
Length of query: 1426
Length of database: 11,106,569
Length adjustment: 111
Effective length of query: 1315
Effective length of database: 8,063,393
Effective search space: 10603361795
Effective search space used: 10603361795
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 118 (50.1 bits)