Os10g0114500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Barley B recombinant like-protein B (Barley B recombinant like-protein A).
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Os10g0114500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Barley B recombinant like-protein B (Barley B recombinant like-protein A).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.29 | 0.184 | 11.6 | -0.0846 | 0.435 | 0.585 | 0.412 | -1.8 | -0.0603 | 14.5 | 28.38 | 271 | -- | -- |
| 15.45 | 0.183 | 11.6 | 0.053 | 0.451 | 0.386 | 0.345 | -- | -0.0388 | 14.4 | 28.46 | 317 | -- | -- |
| 15.85 | 0.185 | 11.6 | -0.0399 | 0.441 | 0.564 | -- | -1.38 | -0.0476 | 14.5 | 28.67 | 269 | -- | -- |
| 15.91 | 0.186 | 11.6 | 0.0577 | 0.447 | 0.402 | -- | -- | -0.0414 | 14.5 | 28.4 | 289 | -- | -- |
| 23.47 | 0.226 | 11.6 | 0.0533 | -- | 0.601 | -- | 0.386 | -0.0929 | -- | 24.61 | 146 | -- | -- |
| 17.79 | 0.198 | 11.6 | 0.0948 | 0.54 | -- | 0.48 | -- | -0.0562 | 15.1 | -- | -- | -- | -- |
| 18.55 | 0.202 | 11.6 | 0.105 | 0.542 | -- | -- | -- | -0.0534 | 15.1 | -- | -- | -- | -- |
| 23.28 | 0.225 | 11.6 | -0.0218 | -- | 0.672 | -- | -- | -0.13 | -- | 24.35 | 150 | -- | -- |
| 16 | 0.186 | 11.6 | -- | 0.441 | 0.413 | -- | -- | -0.0489 | 14.5 | 28.3 | 289 | -- | -- |
| 35.35 | 0.278 | 11.6 | 0.082 | -- | -- | -- | -- | -0.0675 | -- | -- | -- | -- | -- |
| 18.84 | 0.203 | 11.6 | -- | 0.54 | -- | -- | -- | -0.0651 | 15.1 | -- | -- | -- | -- |
| 23.29 | 0.225 | 11.6 | -- | -- | 0.668 | -- | -- | -0.127 | -- | 24.36 | 147 | -- | -- |
| 35.53 | 0.278 | 11.6 | -- | -- | -- | -- | -- | -0.0766 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.83 | temperature | 10 | 270 | > th | dose dependent | rect. | 11 | 14 |
| 4 | 14.05 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 14 |
| 5 | 14.08 | temperature | 30 | 270 | < th | dose independent | rect. | 16 | 5 |
| 10 | 14.13 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 14 |
| 13 | 14.17 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 15 | 4 |
| 25 | 14.29 | radiation | 1 | 90 | > th | dose independent | sin | 17 | NA |
| 26 | 14.29 | radiation | 1 | 90 | < th | dose independent | sin | 17 | NA |
| 27 | 14.29 | temperature | 30 | 270 | < th | dose independent | rect. | 15 | 19 |
| 28 | 14.30 | temperature | 30 | 270 | < th | dose independent | rect. | 6 | 14 |
| 46 | 14.37 | radiation | 1 | 90 | < th | dose dependent | sin | 18 | NA |
| 49 | 14.39 | atmosphere | 1015 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 55 | 14.43 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 19 |
| 63 | 14.46 | temperature | 20 | 10 | > th | dose dependent | rect. | 14 | 19 |
| 67 | 14.47 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 6 |
| 73 | 14.48 | temperature | 15 | 90 | > th | dose independent | rect. | 8 | 15 |
| 89 | 14.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 14 | 6 |
| 112 | 14.57 | temperature | 20 | 270 | > th | dose dependent | rect. | 12 | 4 |
| 114 | 14.57 | temperature | 30 | 90 | < th | dose dependent | rect. | 17 | 6 |
| 163 | 14.65 | temperature | 20 | 10 | > th | dose dependent | sin | 15 | NA |
| 171 | 14.66 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 5 |
| 186 | 14.68 | radiation | 10 | 270 | < th | dose dependent | rect. | 15 | 6 |
| 192 | 14.69 | radiation | 1 | 270 | < th | dose independent | rect. | 14 | 6 |
| 194 | 14.69 | radiation | 1 | 90 | < th | dose independent | rect. | 16 | 7 |
| 205 | 14.70 | radiation | 1 | 90 | < th | dose independent | rect. | 13 | 10 |
| 226 | 14.72 | radiation | 1 | 90 | < th | dose independent | rect. | 9 | 14 |
| 252 | 14.74 | radiation | 1 | 90 | < th | dose dependent | rect. | 13 | 10 |
| 260 | 14.75 | humidity | 60 | 270 | > th | dose independent | rect. | 16 | 18 |
| 265 | 14.75 | radiation | 1 | 90 | < th | dose dependent | rect. | 9 | 14 |
| 269 | 14.76 | humidity | 70 | 270 | > th | dose independent | rect. | 17 | 3 |
| 271 | 14.76 | temperature | 30 | 270 | > th | dose independent | rect. | 12 | 5 |
| 310 | 14.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 14 | 1 |
| 331 | 14.82 | temperature | 30 | 270 | > th | dose independent | rect. | 13 | 3 |
| 402 | 14.87 | temperature | 30 | 270 | < th | dose dependent | rect. | 16 | 4 |
| 404 | 14.87 | humidity | 50 | 270 | > th | dose dependent | rect. | 16 | 5 |
| 453 | 14.91 | radiation | 1 | 90 | > th | dose independent | rect. | 13 | 6 |
| 511 | 14.94 | humidity | 50 | 14400 | > th | dose independent | rect. | 24 | 9 |
| 512 | 14.94 | wind | 9 | 1440 | < th | dose independent | rect. | 24 | 10 |
| 516 | 14.94 | radiation | 30 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 659 | 15.00 | temperature | 30 | 270 | < th | dose independent | rect. | 24 | 23 |
| 677 | 15.01 | temperature | 10 | 270 | > th | dose dependent | rect. | 20 | 22 |
| 703 | 15.03 | humidity | 70 | 90 | < th | dose independent | rect. | 14 | 5 |
| 724 | 15.04 | temperature | 30 | 90 | > th | dose independent | sin | 16 | NA |
| 827 | 15.09 | humidity | 50 | 270 | > th | dose independent | rect. | 6 | 14 |
| 892 | 15.12 | temperature | 10 | 43200 | > th | dose independent | rect. | 13 | 7 |
| 894 | 15.12 | radiation | 1 | 270 | > th | dose independent | rect. | 10 | 9 |
| 907 | 15.12 | humidity | 80 | 90 | < th | dose dependent | rect. | 13 | 6 |
| 921 | 15.13 | temperature | 10 | 43200 | > th | dose independent | rect. | 15 | 5 |
| 944 | 15.14 | temperature | 30 | 90 | < th | dose independent | sin | 15 | NA |